mRNA_Ecto-sp13_S_contig8459.19840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE) HSP 1 Score: 435 bits (1119), Expect = 6.250e-140 Identity = 284/323 (87.93%), Postives = 288/323 (89.16%), Query Frame = 1
Query: 1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTD-IRSISGXXXGSXXXXXXXXXXGACDTLEAAXXXXXXXXXXXXXXXA---------ADGVDEPFTSSARRSRRQGKGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQGS 939
RAALEVEQLVNPMMADVGLEGATFKVLVEESK LGPSGADRVQFL+EANEGQTRGTVDAVASSGEKSRLLLLLET LPPPQARST +VGDRRG VVGEEG TAE VDADG+AAGTAAGGG GVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTD TAVM SAG D IRSISG XX XXXXXXXXXX XXXXXXXXXXXXXXX ADGVDEP +SSARR RRQGKGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQGS
Sbjct: 592 RAALEVEQLVNPMMADVGLEGATFKVLVEESKALGPSGADRVQFLIEANEGQTRGTVDAVASSGEKSRLLLLLETLLPPPQARSTAKVGDRRGVVVGEEGVTAEGVDADGEAAGTAAGGGGGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDTTAVMASAGKDDIRSISGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGVDEPSSSSARRPRRQGKGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQGS 914
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A7S3LCQ9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCQ9_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 7.960e-18 Identity = 70/199 (35.18%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 1 RAALEVEQLVNPMMADVGLEGATFKVLV--------EESKTLGPSGADRVQFLMEANEGQTR------GTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVP-PCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKAL 552
R A + + VN + +G+ + F + + + S G G D V+F+++ T+ GT+ VASSGEK+R+LL +E LP G + G T V SG++ P P V+YDEIDAHVGGR AVA+G +LA+Q SQV+ +TH+ +VAA AD H+VV K L
Sbjct: 42 RVATILREFVNRRLPSLGMATSEFDITINSNARKCTDSSAYSGNLGLDDVEFMLQHGTRTTKEPSRRGGTLHQVASSGEKARILLAIECSLP--------------GSIRAATGSTNTFV--------------SGILPPPIPITVVYDEIDAHVGGRAAVALGHMLADQSLQSQVIAITHSPAVAASADAHIVVQKTL 212
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A512PH52_9CELL (DNA repair protein RecN n=2 Tax=Cellulomonas soli TaxID=931535 RepID=A0A512PH52_9CELL) HSP 1 Score: 92.4 bits (228), Expect = 3.780e-16 Identity = 67/203 (33.00%), Postives = 99/203 (48.77%), Query Frame = 1
Query: 1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISG 609
RAA + ++V+ +A + + GA+ ++ V+ + GP G DRV+ L+ A+ G + AS GE SR++L LE L +T P ++DE+DA VGGR A+ VGR LA R +QV+VVTH A VAA ADQHLVV K+ +D V+ + D+R++ G
Sbjct: 384 RAAQRLAEIVSAELAGLAMAGASLQIDVDGLEEPGPHGLDRVEMLLVAHAGAPARPLGKGASGGELSRVMLALEVALASEPGSAT------------------------------------------PGTFVFDEVDAGVGGRAAIEVGRRLAALARGTQVLVVTHLAQVAAFADQHLVVTKSTSDGVDVVTES--DVRTVRG 542
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: UPI001F3E70BC (DNA repair protein RecN n=1 Tax=Antribacter sp. KLBMP9083 TaxID=2910976 RepID=UPI001F3E70BC) HSP 1 Score: 91.7 bits (226), Expect = 7.240e-16 Identity = 75/183 (40.98%), Postives = 98/183 (53.55%), Query Frame = 1
Query: 4 AALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQA-RSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAG-GGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
AA ++ V + + + GA V V+ ++ LGP GAD V FL+ + G + AS GE SR++L LE L + R+ VG G+ G G+ + DA GTA G +R ++DE+DA VGGR AV VGR LA GR +QVVVVTH A VAA AD HLVV K
Sbjct: 378 AASQLAGAVTQELHGLAMGGAHLVVTVDPAEALGPYGADLVTFLLVPHPGAPERPLGKGASGGELSRVMLALEVALATASSTRAASVVGP---GLPGLFDGSGAALVGRTDAPGTAGEQSDDGALRRT---FVFDEVDAGVGGRAAVEVGRRLAALGRSTQVVVVTHLAQVAAFADAHLVVTK 554
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: F4H8C8_CELFA (DNA repair protein RecN n=4 Tax=Cellulomonas fimi TaxID=1708 RepID=F4H8C8_CELFA) HSP 1 Score: 91.3 bits (225), Expect = 8.910e-16 Identity = 71/202 (35.15%), Postives = 102/202 (50.50%), Query Frame = 1
Query: 4 AALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISG 609
AA + + V+ +A + + GA +V VE + GPSGADRV+ L+ + G ++ AS GE SR++L +E L TA D SG R P ++DE+DA VGGR A+ +GR LA+ R SQV+VVTH A VAA AD+HLVV K+ + V+ + D+R ++G
Sbjct: 385 AAARLARSVSHELAGLAMGGAELQVAVEPGEP-GPSGADRVEMLLVPHAGAPARSLGKGASGGELSRVMLAIEVTLA-----------------------TAPD---------------SGAAR--PATFVFDEVDAGVGGRAAIEIGRRLADVARSSQVLVVTHLAQVAAFADRHLVVTKSTAEGVDVVTES--DVRLVTG 543
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A1Z5K9M0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9M0_FISSO) HSP 1 Score: 91.3 bits (225), Expect = 1.180e-15 Identity = 67/188 (35.64%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLM------EANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
+ A E+ V + VG+E + F + P+ D V+FL+ + + G ++ +ASSGEK+R+LL +E LP A S + V V E+ AE +V +PP A++YDEIDAHVGGR AVA+G +L Q + SQV+ +TH+AS+AA AD H+VV +
Sbjct: 526 QVADELTSSVTSRLPLVGMERSIFTASITPRGDA-PNSDDTVEFLLLHRNADDEKKAADGGRMNEIASSGEKARILLCVECELPGSVAAS-YAVAR----VKKEDETEAE------------------LVGLPPIAIVYDEIDAHVGGRAAVAMGSMLVEQSKWSQVIAITHSASIAAAADSHIVVQR 689
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: B8C1M4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1M4_THAPS) HSP 1 Score: 91.3 bits (225), Expect = 1.250e-15 Identity = 69/214 (32.24%), Postives = 105/214 (49.07%), Query Frame = 1
Query: 7 ALEVEQLVNPMMADVGLEGATFKVLVE------ESKTLGPS--GADRVQFLM---------EANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRD---------------SQVVVVTHTASVAALADQHLVVDKAL 552
A + + V+ ++ +GLEG +F+V ++ E G G D V FL+ + +E Q G ++ V SSGEKSR+LL +ET LP G +A++V D + P ++YDEIDAHVGGR AV + +LLA+Q R SQ++ +TH+ASVAA+AD+H+VV++ +
Sbjct: 566 ATNLSEAVSQILPSLGLEGTSFQVQLKQRQGGFEDPYFGADNVGVDLVDFLLLHQKSNTGGQIDESQRGGNIEQVGSSGEKSRVLLAIETALP-----------GSIGSTCNAYSNSADNVQTDSSP------------KAQPICIIYDEIDAHVGGRAAVTMAKLLADQTRKAPDLADIDTATMERGSQIIAITHSASVAAIADKHIVVERTI 756
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: UPI00177C5FFD (DNA repair protein RecN n=2 Tax=Cellulomonas sp. JH27-2 TaxID=2774139 RepID=UPI00177C5FFD) HSP 1 Score: 90.5 bits (223), Expect = 1.580e-15 Identity = 72/201 (35.82%), Postives = 98/201 (48.76%), Query Frame = 1
Query: 7 ALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISG 609
A ++ V +A + + GA +V VE ++ LGP GAD+V+ L+ + G + AS GE SR++L LE L T+ D SG R P ++DE+DA VGG+ AV VGR LA R SQV+VVTH A VAA AD HLVV K+ A V +D+RS++G
Sbjct: 387 AQQLANAVTAELAGLAMSGADLRVQVEPAQALGPHGADQVEMLLVPHAGAPARPLGKGASGGELSRVMLALEVALA-----------------------TSPD---------------SGASR--PGTFVFDEVDAGVGGKAAVEVGRRLAMLARQSQVLVVTHLAQVAAFADHHLVVTKS--QAAGVDVVTDSDVRSVTG 545
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: UPI000F7A0397 (DNA repair protein RecN n=1 Tax=Antribacter gilvus TaxID=2304675 RepID=UPI000F7A0397) HSP 1 Score: 90.5 bits (223), Expect = 1.630e-15 Identity = 70/182 (38.46%), Postives = 95/182 (52.20%), Query Frame = 1
Query: 1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
+AA + + V + + + GA V V++++ LGP GAD+V FL+ + G + AS GE SR++L LE L A + R+G A+D G A G +R ++DE+DA VGGR AV VGR LA GR +QVVVVTH A VAA AD H+VV K
Sbjct: 377 QAASALAEAVTEELHGLAMGGAHLVVTVDDAEALGPFGADQVTFLLVPHPGAPERPLGKGASGGELSRVMLALEVALAT--AANDRSASARQG---------ADD--------GAGAHGDRAALRRT---FVFDEVDAGVGGRAAVEVGRRLATLGRSTQVVVVTHLAQVAAFADAHVVVTK 536
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A1Z5JGS5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGS5_FISSO) HSP 1 Score: 90.1 bits (222), Expect = 2.700e-15 Identity = 63/188 (33.51%), Postives = 97/188 (51.60%), Query Frame = 1
Query: 1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLM------EANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
+ A E+ V + VG+E + F + P+ D + FL+ + + G ++ +ASSGEK+R+LL +E LP A S E ++ +A+ +V +PP A++YDEIDAHVGGR AVA+G +L Q + SQV+ +TH+AS+AA AD H+VV +
Sbjct: 509 QVADELTSSVTSRLPLVGMERSIFTASITPRGDT-PNSDDTIDFLLLHRYADDEKKAADGGKMNEIASSGEKARILLCVECELPGSVAAS----------YAVERAKKEDETEAE-------------LVGLPPIAIVYDEIDAHVGGRAAVAMGSMLVEQSKWSQVIAITHSASIAAAADSHIVVQR 672 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8459.19840.1 >prot_Ecto-sp13_S_contig8459.19840.1 ID=prot_Ecto-sp13_S_contig8459.19840.1|Name=mRNA_Ecto-sp13_S_contig8459.19840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp MMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASback to top mRNA from alignment at Ecto-sp13_S_contig8459:4364..6525- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8459.19840.1 ID=mRNA_Ecto-sp13_S_contig8459.19840.1|Name=mRNA_Ecto-sp13_S_contig8459.19840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8459:4364..6525- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8459:4364..6525- >mRNA_Ecto-sp13_S_contig8459.19840.1 ID=mRNA_Ecto-sp13_S_contig8459.19840.1|Name=mRNA_Ecto-sp13_S_contig8459.19840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8459:4364..6525- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |