mRNA_Ecto-sp13_S_contig67244.17623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67244.17623.1
Unique NamemRNA_Ecto-sp13_S_contig67244.17623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.310e-36
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1
Query:    1 VMGGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQILRGYL 189
            VMGGVQSGVQAVHHTTGLPWWATIAVATIGVK+SLLPVVVYQAGHMDRMRAAWPEIQILRGYL
Sbjct:    3 VMGGVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRGYL 65          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 9.360e-35
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    1 VMGGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQILRGYL 189
            V+GGVQSGVQAVHHTTGLPWWATIAVATIGVK+SLLPVVVYQAGHMDRMRAAWPEIQILR YL
Sbjct:   14 VLGGVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRSYL 76          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: W1QDD0_OGAPD (Mitochondrial inner membrane protein OXA1 n=5 Tax=Ogataea TaxID=461281 RepID=W1QDD0_OGAPD)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-10
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   13 VQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQILR 180
            +Q+ ++AVH TTGLPWWATIA  T+G++ +LLP+ +  +  M R +AA PE ++LR
Sbjct:   85 IQTTLEAVHVTTGLPWWATIAATTLGIRFALLPLFMASSDAMARSQAAAPETKVLR 140          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: UPI001DB4B477 (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001DB4B477)

HSP 1 Score: 63.2 bits (152), Expect = 3.960e-10
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   13 VQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQILR 180
            +Q+ ++AVH TTGLPWWATIA  TIG++++  P+ +  +  M R +AA PE ++LR
Sbjct:   83 IQTALEAVHVTTGLPWWATIAATTIGLRLAFFPLFMSSSDAMARSQAAAPETKVLR 138          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: A0A6G0WN15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN15_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.790e-9
Identity = 26/64 (40.62%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 VMGGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQ-ILRGYL 189
            ++   Q  ++AVH TTGLPWWAT+ +  + V+ +L P++VYQ    +RM A+ PE++ + + YL
Sbjct:    2 IVDAAQKVIEAVHTTTGLPWWATLGLTAVAVRGTLFPLLVYQIKATERMAASAPEMRNVWKAYL 65          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: A0A6A3NZB6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NZB6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.340e-8
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 VMGGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQIL 177
            ++ GVQS ++AVH TTGLPWWAT+  + + V+ ++LP  V+    M R+  A P+   L
Sbjct:   15 ILQGVQSVLEAVHTTTGLPWWATLMFSGMTVRAAILPFYVFHIQAMQRLMQARPDFSKL 73          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: A0A8K1FF33_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF33_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 1.750e-8
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   25 VQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQILR 180
            ++AVH TTGLPWWATI   T  ++ +LLP+ +    + DRM+A  PE+  LR
Sbjct:  109 LEAVHITTGLPWWATIVATTFAIRTALLPLTIKSLRNADRMKAFQPEMDKLR 160          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: A0A6A3K1K8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3K1K8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.380e-8
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 VMGGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQIL 177
            ++ GVQS ++AVH TTGLPWWAT+ ++ + V+ ++ P  V+Q   M R+  A P+   L
Sbjct:   87 IVQGVQSALEAVHTTTGLPWWATLMLSGVTVRAAIFPFYVFQIQAMQRLMQARPDFSKL 145          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: I4YHJ9_WALMC (Uncharacterized protein n=3 Tax=Wallemia mellicola TaxID=1708541 RepID=I4YHJ9_WALMC)

HSP 1 Score: 58.2 bits (139), Expect = 2.470e-8
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    7 GGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQ 171
            G VQ  ++AVH +TGLPWWATIAV T+ ++++L P++     H  RM    PE+Q
Sbjct:  104 GFVQQALEAVHVSTGLPWWATIAVTTVSLRLALFPLLRNSLIHTSRMAVHQPEMQ 158          
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Match: A0A4T0FWJ1_9BASI (Uncharacterized protein n=1 Tax=Wallemia hederae TaxID=1540922 RepID=A0A4T0FWJ1_9BASI)

HSP 1 Score: 58.2 bits (139), Expect = 2.470e-8
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    7 GGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRAAWPEIQ 171
            G VQ  ++AVH +TGLPWWATIAV T+ ++++L P++     H  RM    PE+Q
Sbjct:  109 GFVQQALEAVHVSTGLPWWATIAVTTVSLRLALFPLLRNSLIHTSRMAVHQPEMQ 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67244.17623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMT8_ECTSI1.310e-3698.41Oxa1-like homolog, mitochondrial inner membrane in... [more]
A0A6H5JKU0_9PHAE9.360e-3595.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W1QDD0_OGAPD1.120e-1050.00Mitochondrial inner membrane protein OXA1 n=5 Tax=... [more]
UPI001DB4B4773.960e-1048.21uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
A0A6G0WN15_9STRA4.790e-940.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3NZB6_9STRA1.340e-842.37Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A8K1FF33_PYTOL1.750e-848.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3K1K8_9STRA2.380e-842.37Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
I4YHJ9_WALMC2.470e-847.27Uncharacterized protein n=3 Tax=Wallemia mellicola... [more]
A0A4T0FWJ1_9BASI2.470e-847.27Uncharacterized protein n=1 Tax=Wallemia hederae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67244contigEcto-sp13_S_contig67244:515..703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score131.3
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D7FMT8
Model size189
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
Cds size186
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463924.7682083-CDS-Ecto-sp13_S_contig67244:514..7001681463924.7682083-CDS-Ecto-sp13_S_contig67244:514..700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67244 515..700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463924.7924836-UTR-Ecto-sp13_S_contig67244:700..7031681463924.7924836-UTR-Ecto-sp13_S_contig67244:700..703Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig67244 701..703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67244.17623.1prot_Ecto-sp13_S_contig67244.17623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67244 515..700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67244.17623.1

>prot_Ecto-sp13_S_contig67244.17623.1 ID=prot_Ecto-sp13_S_contig67244.17623.1|Name=mRNA_Ecto-sp13_S_contig67244.17623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MGGVQSGVQAVHHTTGLPWWATIAVATIGVKVSLLPVVVYQAGHMDRMRA
AWPEIQILRGYL
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mRNA from alignment at Ecto-sp13_S_contig67244:515..703-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67244.17623.1 ID=mRNA_Ecto-sp13_S_contig67244.17623.1|Name=mRNA_Ecto-sp13_S_contig67244.17623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67244:515..703- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATGGGCGGGGTGCAGTCCGGCGTCCAGGCCGTGCACCACACTACCGG GCTTCCATGGTGGGCCACGATTGCCGTGGCAACGATCGGCGTGAAGGTTT CGCTGCTGCCCGTGGTGGTGTACCAGGCGGGGCATATGGACCGCATGAGA GCGGCTTGGCCAGAGATACAGATCTTGAGGGGCTACCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67244:515..703-

>mRNA_Ecto-sp13_S_contig67244.17623.1 ID=mRNA_Ecto-sp13_S_contig67244.17623.1|Name=mRNA_Ecto-sp13_S_contig67244.17623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67244:515..703- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGGGTGCAGTCCGGCGTCCAGGCCGTGCACCACACTACCGGGCT
TCCATGGTGGGCCACGATTGCCGTGGCAACGATCGGCGTGAAGGTTTCGC
TGCTGCCCGTGGTGGTGTACCAGGCGGGGCATATGGACCGCATGAGAGCG
GCTTGGCCAGAGATACAGATCTTGAGGGGCTACCTC
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