mRNA_Ecto-sp13_S_contig6684.17556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI) HSP 1 Score: 162 bits (409), Expect = 5.260e-44 Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKS 246
AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGG+APDVYTYSSLVTAYARLGDVE AVKTLSDMSKS
Sbjct: 960 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSKS 1041
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A6S7MXI6_LACSI (Uncharacterized protein n=2 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7MXI6_LACSI) HSP 1 Score: 63.2 bits (152), Expect = 2.450e-9 Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
A+ LF ++ KP T+N+++ L + + P +LY EM G PD TYS+L++A+ARLG A++ +M ++G PN
Sbjct: 276 ALSLFYQVKGRKCKPTATTYNSIILMLMQENHPEKVYDLYSEMCNEGNCFPDTVTYSALMSAFARLGHDNPAIRLFDEMKENGFHPN 362
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A5N6NJI0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NJI0_9ASTR) HSP 1 Score: 62.0 bits (149), Expect = 6.160e-9 Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
A+ LF ++ KP T+N+++ L + + P +LY EM G PD TYS+L++A+A+LG + A++ +M ++G PN
Sbjct: 177 ALSLFYKVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDQPAIRLFDEMKENGFHPN 263
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A2U1PP56_ARTAN (Pentatricopeptide repeat (PPR-like) superfamily protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PP56_ARTAN) HSP 1 Score: 62.0 bits (149), Expect = 6.170e-9 Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
A+ LF ++ KP T+N+++ L + + P +LY EM + G PD TYS+L++A+A+LG A++ +M ++G PN
Sbjct: 180 ALSLFYQVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCDEGNCFPDTVTYSALMSAFAKLGHDNPAIRLFDEMKENGFHPN 266
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A251U099_HELAN (Putative pentatricopeptide repeat (PPR-like) superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U099_HELAN) HSP 1 Score: 62.0 bits (149), Expect = 6.170e-9 Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
A+ LF ++ KP T+N+++ L + + P +LY EM G PD TYS+L++A+A+LG + A++ +M ++G PN
Sbjct: 181 ALSLFYQVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDQPAIRLFDEMKENGFHPN 267
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A2J6KN50_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KN50_LACSA) HSP 1 Score: 61.6 bits (148), Expect = 8.410e-9 Identity = 29/87 (33.33%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
A+ LF ++ KP T+N+++ L + + P +LY EM G PD TYS+L++A+A+LG A++ +M ++G PN
Sbjct: 174 ALSLFYQVKGRKCKPTASTYNSIILMLMQENHPEKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDNPAIRLFDEMKENGFHPN 260
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A7S3TG76_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TG76_9SPIT) HSP 1 Score: 58.2 bits (139), Expect = 2.010e-8 Identity = 27/95 (28.42%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 10 LFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVI 294
+F M+ H +KPNL+T++T++ G +A E+ ++M + + PD Y+S++ A+ ++A++ L +M +GV P+ +TLS +++++
Sbjct: 5 IFEDMQAHYIKPNLITYSTMVKGHCQAGDIQRGFEILEQMQKDAKLKPDEIMYNSILDGCAKQHRTDEALRILDEMRAAGVGPSNYTLSILVKLL 99
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A835UJD0_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UJD0_VANPL) HSP 1 Score: 60.1 bits (144), Expect = 2.680e-8 Identity = 28/98 (28.57%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVI 294
A+++F V+ N+ ++N ++ L + + M V G PDV +YS+++ Y + G+++KA + +M K G+KPN+FT++S+M ++
Sbjct: 218 ALNVFVEFPLCGVRWNVTSYNIVIRVLCGVGKVGMARDFLRNMDSVDGFPPDVISYSTVIDGYCQAGELQKAYELFEEMGKKGLKPNKFTVNSIMGLL 315
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A167LUN4_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LUN4_PHYB8) HSP 1 Score: 60.1 bits (144), Expect = 2.930e-8 Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 1
Query: 1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTL--ELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVM 285
A+ +FR M NV P++ ++ ++ + K L EL+DEM GI DV Y+SL++ +R D+ ++ L DM +SGVKPN +T+++++
Sbjct: 361 ALRMFRKMAKDNVSPDVFSYAIVIDAIAKDDTQDADLAFELFDEMRN-RGIRSDVVLYTSLISLCSRKNDMPNIMRLLRDMKESGVKPNIYTINTII 456
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: UPI001D86E4C4 (uncharacterized protein n=1 Tax=Truncatella angustata TaxID=152316 RepID=UPI001D86E4C4) HSP 1 Score: 58.9 bits (141), Expect = 7.680e-8 Identity = 23/81 (28.40%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 40 KPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSV 282
+P++ T+ L+ G P + + M++ GGI P++ T+++L+TA+AR+ D + AV+ + + +SG++P++ T+ ++
Sbjct: 656 RPSVHTWTMLVNGFKNHRQPGIAASMVRVMIKEGGIKPNMVTWNTLITAFARVNDAQGAVRAIKYLEQSGLRPDKHTIEAI 736 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6684.17556.1 >prot_Ecto-sp13_S_contig6684.17556.1 ID=prot_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPback to top mRNA from alignment at Ecto-sp13_S_contig6684:7189..7953- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6684.17556.1 ID=mRNA_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6684:7189..7953- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6684:7189..7953- >mRNA_Ecto-sp13_S_contig6684.17556.1 ID=mRNA_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6684:7189..7953- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |