prot_Ecto-sp13_S_contig6684.17556.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6684.17556.1
Unique Nameprot_Ecto-sp13_S_contig6684.17556.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.390e-43
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKS 81
            MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGG+APDVYTYSSLVTAYARLGDVE AVKTLSDMSKS
Sbjct:  961 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSKS 1041          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A6S7MXI6_LACSI (Uncharacterized protein n=2 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7MXI6_LACSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-8
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 86
            + LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+ARLG    A++   +M ++G  PN
Sbjct:  277 LSLFYQVKGRKCKPTATTYNSIILMLMQENHPEKVYDLYSEMCNEGNCFPDTVTYSALMSAFARLGHDNPAIRLFDEMKENGFHPN 362          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A7S3TG76_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TG76_9SPIT)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-8
Identity = 27/95 (28.42%), Postives = 58/95 (61.05%), Query Frame = 0
Query:    3 LFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVI 97
            +F  M+ H +KPNL+T++T++ G  +A       E+ ++M +   + PD   Y+S++   A+    ++A++ L +M  +GV P+ +TLS +++++
Sbjct:    5 IFEDMQAHYIKPNLITYSTMVKGHCQAGDIQRGFEILEQMQKDAKLKPDEIMYNSILDGCAKQHRTDEALRILDEMRAAGVGPSNYTLSILVKLL 99          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A5N6NJI0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NJI0_9ASTR)

HSP 1 Score: 60.1 bits (144), Expect = 2.820e-8
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 86
            + LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+A+LG  + A++   +M ++G  PN
Sbjct:  178 LSLFYKVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDQPAIRLFDEMKENGFHPN 263          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A2U1PP56_ARTAN (Pentatricopeptide repeat (PPR-like) superfamily protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PP56_ARTAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.820e-8
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 86
            + LF  ++    KP   T+N+++  L + + P    +LY EM + G   PD  TYS+L++A+A+LG    A++   +M ++G  PN
Sbjct:  181 LSLFYQVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCDEGNCFPDTVTYSALMSAFAKLGHDNPAIRLFDEMKENGFHPN 266          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A251U099_HELAN (Putative pentatricopeptide repeat (PPR-like) superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U099_HELAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.820e-8
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 86
            + LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+A+LG  + A++   +M ++G  PN
Sbjct:  182 LSLFYQVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDQPAIRLFDEMKENGFHPN 267          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A2J6KN50_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KN50_LACSA)

HSP 1 Score: 59.7 bits (143), Expect = 3.850e-8
Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 86
            + LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+A+LG    A++   +M ++G  PN
Sbjct:  175 LSLFYQVKGRKCKPTASTYNSIILMLMQENHPEKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDNPAIRLFDEMKENGFHPN 260          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: UPI001D86E4C4 (uncharacterized protein n=1 Tax=Truncatella angustata TaxID=152316 RepID=UPI001D86E4C4)

HSP 1 Score: 58.9 bits (141), Expect = 7.420e-8
Identity = 23/81 (28.40%), Postives = 52/81 (64.20%), Query Frame = 0
Query:   13 KPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSV 93
            +P++ T+  L+ G      P +   +   M++ GGI P++ T+++L+TA+AR+ D + AV+ +  + +SG++P++ T+ ++
Sbjct:  656 RPSVHTWTMLVNGFKNHRQPGIAASMVRVMIKEGGIKPNMVTWNTLITAFARVNDAQGAVRAIKYLEQSGLRPDKHTIEAI 736          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A835UJD0_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UJD0_VANPL)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-7
Identity = 26/86 (30.23%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   12 VKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVI 97
            V+ N+ ++N ++  L       +  +    M  V G  PDV +YS+++  Y + G+++KA +   +M K G+KPN+FT++S+M ++
Sbjct:  230 VRWNVTSYNIVIRVLCGVGKVGMARDFLRNMDSVDGFPPDVISYSTVIDGYCQAGELQKAYELFEEMGKKGLKPNKFTVNSIMGLL 315          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A167LUN4_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LUN4_PHYB8)

HSP 1 Score: 58.2 bits (139), Expect = 1.340e-7
Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    1 MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTL--ELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVM 94
            + +FR M   NV P++ ++  ++  + K       L  EL+DEM    GI  DV  Y+SL++  +R  D+   ++ L DM +SGVKPN +T+++++
Sbjct:  362 LRMFRKMAKDNVSPDVFSYAIVIDAIAKDDTQDADLAFELFDEMRN-RGIRSDVVLYTSLISLCSRKNDMPNIMRLLRDMKESGVKPNIYTINTII 456          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM8_ECTSI2.390e-4397.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S7MXI6_LACSI1.120e-833.72Uncharacterized protein n=2 Tax=Lactuca saligna Ta... [more]
A0A7S3TG76_9SPIT1.950e-828.42Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A5N6NJI0_9ASTR2.820e-832.56Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2U1PP56_ARTAN2.820e-832.56Pentatricopeptide repeat (PPR-like) superfamily pr... [more]
A0A251U099_HELAN2.820e-832.56Putative pentatricopeptide repeat (PPR-like) super... [more]
A0A2J6KN50_LACSA3.850e-832.56Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
UPI001D86E4C47.420e-828.40uncharacterized protein n=1 Tax=Truncatella angust... [more]
A0A835UJD0_VANPL1.240e-730.23Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A167LUN4_PHYB81.340e-733.33Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..102
e-value: 7.9E-27
score: 96.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 53..86
e-value: 1.1E-9
score: 35.9
coord: 18..52
e-value: 3.7E-5
score: 21.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 43..97
e-value: 9.7E-13
score: 48.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 51..85
score: 13.23
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 15..50
score: 8.254
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6684contigEcto-sp13_S_contig6684:7189..7950 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6684.17556.1mRNA_Ecto-sp13_S_contig6684.17556.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6684 7189..7953 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6684.17556.1 ID=prot_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAP
DVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVIRKE
LVGGSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat