mRNA_Ecto-sp13_S_contig6684.17556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6684.17556.1
Unique NamemRNA_Ecto-sp13_S_contig6684.17556.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.260e-44
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKS 246
            AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGG+APDVYTYSSLVTAYARLGDVE AVKTLSDMSKS
Sbjct:  960 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSKS 1041          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A6S7MXI6_LACSI (Uncharacterized protein n=2 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7MXI6_LACSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.450e-9
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
            A+ LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+ARLG    A++   +M ++G  PN
Sbjct:  276 ALSLFYQVKGRKCKPTATTYNSIILMLMQENHPEKVYDLYSEMCNEGNCFPDTVTYSALMSAFARLGHDNPAIRLFDEMKENGFHPN 362          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A5N6NJI0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NJI0_9ASTR)

HSP 1 Score: 62.0 bits (149), Expect = 6.160e-9
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
            A+ LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+A+LG  + A++   +M ++G  PN
Sbjct:  177 ALSLFYKVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDQPAIRLFDEMKENGFHPN 263          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A2U1PP56_ARTAN (Pentatricopeptide repeat (PPR-like) superfamily protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PP56_ARTAN)

HSP 1 Score: 62.0 bits (149), Expect = 6.170e-9
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
            A+ LF  ++    KP   T+N+++  L + + P    +LY EM + G   PD  TYS+L++A+A+LG    A++   +M ++G  PN
Sbjct:  180 ALSLFYQVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCDEGNCFPDTVTYSALMSAFAKLGHDNPAIRLFDEMKENGFHPN 266          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A251U099_HELAN (Putative pentatricopeptide repeat (PPR-like) superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U099_HELAN)

HSP 1 Score: 62.0 bits (149), Expect = 6.170e-9
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
            A+ LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+A+LG  + A++   +M ++G  PN
Sbjct:  181 ALSLFYQVKGRKCKPTASTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDQPAIRLFDEMKENGFHPN 267          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A2J6KN50_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KN50_LACSA)

HSP 1 Score: 61.6 bits (148), Expect = 8.410e-9
Identity = 29/87 (33.33%), Postives = 49/87 (56.32%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPN 261
            A+ LF  ++    KP   T+N+++  L + + P    +LY EM   G   PD  TYS+L++A+A+LG    A++   +M ++G  PN
Sbjct:  174 ALSLFYQVKGRKCKPTASTYNSIILMLMQENHPEKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGHDNPAIRLFDEMKENGFHPN 260          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A7S3TG76_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TG76_9SPIT)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-8
Identity = 27/95 (28.42%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   10 LFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVI 294
            +F  M+ H +KPNL+T++T++ G  +A       E+ ++M +   + PD   Y+S++   A+    ++A++ L +M  +GV P+ +TLS +++++
Sbjct:    5 IFEDMQAHYIKPNLITYSTMVKGHCQAGDIQRGFEILEQMQKDAKLKPDEIMYNSILDGCAKQHRTDEALRILDEMRAAGVGPSNYTLSILVKLL 99          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A835UJD0_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UJD0_VANPL)

HSP 1 Score: 60.1 bits (144), Expect = 2.680e-8
Identity = 28/98 (28.57%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVI 294
            A+++F       V+ N+ ++N ++  L       +  +    M  V G  PDV +YS+++  Y + G+++KA +   +M K G+KPN+FT++S+M ++
Sbjct:  218 ALNVFVEFPLCGVRWNVTSYNIVIRVLCGVGKVGMARDFLRNMDSVDGFPPDVISYSTVIDGYCQAGELQKAYELFEEMGKKGLKPNKFTVNSIMGLL 315          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: A0A167LUN4_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LUN4_PHYB8)

HSP 1 Score: 60.1 bits (144), Expect = 2.930e-8
Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 AMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTL--ELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVM 285
            A+ +FR M   NV P++ ++  ++  + K       L  EL+DEM    GI  DV  Y+SL++  +R  D+   ++ L DM +SGVKPN +T+++++
Sbjct:  361 ALRMFRKMAKDNVSPDVFSYAIVIDAIAKDDTQDADLAFELFDEMRN-RGIRSDVVLYTSLISLCSRKNDMPNIMRLLRDMKESGVKPNIYTINTII 456          
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Match: UPI001D86E4C4 (uncharacterized protein n=1 Tax=Truncatella angustata TaxID=152316 RepID=UPI001D86E4C4)

HSP 1 Score: 58.9 bits (141), Expect = 7.680e-8
Identity = 23/81 (28.40%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   40 KPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAPDVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSV 282
            +P++ T+  L+ G      P +   +   M++ GGI P++ T+++L+TA+AR+ D + AV+ +  + +SG++P++ T+ ++
Sbjct:  656 RPSVHTWTMLVNGFKNHRQPGIAASMVRVMIKEGGIKPNMVTWNTLITAFARVNDAQGAVRAIKYLEQSGLRPDKHTIEAI 736          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6684.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM8_ECTSI5.260e-4497.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S7MXI6_LACSI2.450e-934.48Uncharacterized protein n=2 Tax=Lactuca saligna Ta... [more]
A0A5N6NJI0_9ASTR6.160e-933.33Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2U1PP56_ARTAN6.170e-933.33Pentatricopeptide repeat (PPR-like) superfamily pr... [more]
A0A251U099_HELAN6.170e-933.33Putative pentatricopeptide repeat (PPR-like) super... [more]
A0A2J6KN50_LACSA8.410e-933.33Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
A0A7S3TG76_9SPIT2.010e-828.42Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A835UJD0_VANPL2.680e-828.57Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A167LUN4_PHYB82.930e-834.02Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
UPI001D86E4C47.680e-828.40uncharacterized protein n=1 Tax=Truncatella angust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6684contigEcto-sp13_S_contig6684:7189..7953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score161.0
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D7FTM8
Model size324
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size321
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463918.8555868-CDS-Ecto-sp13_S_contig6684:7188..74081681463918.8555868-CDS-Ecto-sp13_S_contig6684:7188..7408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6684 7189..7408 -
1681463918.8662262-CDS-Ecto-sp13_S_contig6684:7849..79501681463918.8662262-CDS-Ecto-sp13_S_contig6684:7849..7950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6684 7850..7950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463918.8752005-UTR-Ecto-sp13_S_contig6684:7950..79531681463918.8752005-UTR-Ecto-sp13_S_contig6684:7950..7953Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6684 7951..7953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6684.17556.1prot_Ecto-sp13_S_contig6684.17556.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6684 7189..7950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6684.17556.1

>prot_Ecto-sp13_S_contig6684.17556.1 ID=prot_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELYDEMMEVGGIAP
DVYTYSSLVTAYARLGDVEKAVKTLSDMSKSGVKPNRFTLSSVMQVIRKE
LVGGSV*
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mRNA from alignment at Ecto-sp13_S_contig6684:7189..7953-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6684.17556.1 ID=mRNA_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6684:7189..7953- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATGGACCTCTTCCGGGGCATGCGGTACCACAACGTCAAGCCTAACCT CCTGACTTTCAACACCCTCATGGCGGGCCTGAACAAGGCCCACGTTCCCG CCGTGTGAGTGGGAGTAGTTGTCGGCATAACAACGGGGGAAGGGGGGGTA TTGCAGTAAGTAGAAGTACAAAGTACGGTCTGATGTGCCCCCAGGGGTGG CACAGCGATGTGCGTGTCCGAACGTCGGGGGCTGAGAGGCGGGATGTGAT TGTATTGAGTGGCACTTGGTGTGTGAACAGCGTTGAAAAATTTCACCAGA CACGCCATGTCGAGAAGAACGACACAGCAGCAGCAGCAGCATTAATTATT GCGTGCTGCGCGTGACCATTTCGAAAAAAAAAAAAAACACAAAAAAACAA CATTATTTTTTTCGTGCTCCGGTTGGGTTTTTTTTTTGGCTCTTCCCCTC TCCCCCCCCCCCCCCCCCCCCTGTGTGTTTCCCGTTCTTGCACCCACCCC GCGTAATTGCGATTGGATTGACGTGTGTGATACCCACCACCGCAGCACGC TAGAACTGTACGACGAGATGATGGAGGTCGGGGGCATAGCGCCCGATGTG TACACGTACTCGAGCCTCGTGACCGCCTACGCTCGCCTCGGCGACGTGGA GAAGGCTGTCAAGACCCTGTCGGACATGTCCAAGAGCGGGGTCAAGCCAA ACCGTTTCACACTCTCGTCGGTCATGCAGGTAATTCGCAAGGAGTTGGTC GGTGGGTCAGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6684:7189..7953-

>mRNA_Ecto-sp13_S_contig6684.17556.1 ID=mRNA_Ecto-sp13_S_contig6684.17556.1|Name=mRNA_Ecto-sp13_S_contig6684.17556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6684:7189..7953- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCTCTTCCGGGGCATGCGGTACCACAACGTCAAGCCTAACCTCCT
GACTTTCAACACCCTCATGGCGGGCCTGAACAAGGCCCACGTTCCCGCCG
TCACGCTAGAACTGTACGACGAGATGATGGAGGTCGGGGGCATAGCGCCC
GATGTGTACACGTACTCGAGCCTCGTGACCGCCTACGCTCGCCTCGGCGA
CGTGGAGAAGGCTGTCAAGACCCTGTCGGACATGTCCAAGAGCGGGGTCA
AGCCAAACCGTTTCACACTCTCGTCGGTCATGCAGGTAATTCGCAAGGAG
TTGGTCGGTGGGTCAGTTTGA
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