mRNA_Ecto-sp13_S_contig6478.17261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 539 bits (1388), Expect = 2.320e-174 Identity = 380/433 (87.76%), Postives = 387/433 (89.38%), Query Frame = 1
Query: 1 SLKVECPSTVRTKLLATHKVNFVKIQSRVRRRRWCRGCIFGRRCFGDGRGRRPAATHLRSPAARAWR-----GSMSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAASLPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARRLVSRATLIVVPVSLVGQWAE 1257
+LKVEC STVRTKLLA+HKVNF+KIQSRVRRRRWCRGC GR CFGDGRGRRPAATHLRSPAAR+ R G SPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIE+QPVQFVSTRPGLRRT AAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX RREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRD G+HSSL+HRKSLREQ D HFDSARRLVSRATLIVVPVSLVGQWAE
Sbjct: 5 TLKVECLSTVRTKLLASHKVNFLKIQSRVRRRRWCRGCP-GRCCFGDGRGRRPAATHLRSPAARSARVDDRHGPQSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEKQPVQFVSTRPGLRRTPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGVAAXXXXXXXXXXXXXXXXAAARREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDGGSHSSLKHRKSLREQPDRHFDSARRLVSRATLIVVPVSLVGQWAE 436
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE) HSP 1 Score: 283 bits (724), Expect = 2.530e-86 Identity = 301/493 (61.05%), Postives = 315/493 (63.89%), Query Frame = 1
Query: 1 SLKVECPSTVRTKLLATHKVNFVKIQSR--VRRRRW----------------CR-----------GCIF-------------GRRCF---------------------------GDGRG--RRPAATHLRSPAARAWRGSMSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAAS---LPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARRLVSRATLIVVPVSLVGQWAE 1257
+LKV C S VRTKLLA HKVNFVKIQSR + R W CR C G+R GDG G A + AA + + QSSPWKRPMLRALSTHV + GL VTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPG+RRT AAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RREYDFSLAGILKSAESSGYRVVDPQ + ++DL + + EPPHITGGLLCEEMGLGKTIEVLSTILANPRD GAHSSLEHRKSLREQH H+DS RRLVSRATLIVVPVSLVGQWAE
Sbjct: 55 TLKVACLSAVRTKLLAAHKVNFVKIQSRPCLVVRTWDQDGEFTSRAGEHVPVCRLLDAVTTGLVTSCAVVAPSSGTTISAAGGKRVGHTAAVGVGTSAAAXXXXXPPANDGCDGGDGTGDVSSAVAASETNEAADLLQHVYALQSSPWKRPMLRALSTHVPTDYGLAVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGVRRTPAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARREYDFSLAGILKSAESSGYRVVDPQASITSIDLADWSTAEL------------------------------------------EPPHITGGLLCEEMGLGKTIEVLSTILANPRDGGAHSSLEHRKSLREQHGRHYDSGRRLVSRATLIVVPVSLVGQWAE 505
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA) HSP 1 Score: 151 bits (382), Expect = 7.520e-37 Identity = 107/318 (33.65%), Postives = 138/318 (43.40%), Query Frame = 1
Query: 214 PQSSPWKRPMLRALST---------------HVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAASLPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANP 1113
PQSSPW+RPM+R L++ A+ + VT+ +Y RL+FELIA+ +M +L P V A + +F + G R S+ + A TSS RR++ FSL G+L +AES+GY V DPQP LTV +F +Q+S+ QWMLD ER P LN YFWERR W D +YFP AGE RL +PPH TGG+LCEEMGLGKT+E L+ ILANP
Sbjct: 225 PQSSPWRRPMIRLLTSLQPPPAILLAPDEPEEEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSGAPRPSS----NATAGATSSNGVVDVVEESEGEGRVKERRSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERA-------------------------RRDFQFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGP-SLNEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVECLALILANP 512
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.910e-36 Identity = 113/337 (33.53%), Postives = 146/337 (43.32%), Query Frame = 1
Query: 157 PAATHLRSPAARAWRGSMSPQSSPWKRPMLRALSTHVS---------------AEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAASLPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANP 1113
P +H S R W +PQSSPW+RPM+R L++ S A+ + VT+ +Y RL+FELIA+ +M +L P V A + +F + G R S+ + A TSS RR++ FSL G+L +AES+GY V DPQP LTV +F +Q+S+ QWMLD ER P LN YFWERR W D +YFP AGE RL +PPH TGG+LCEEMGLGKT+E L+ ILANP
Sbjct: 208 PEESHA-SVMERLW-SLQNPQSSPWRRPMIRLLTSLQSPPAMLLAPDEPEKEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSGAPRPSS----NATAGATSSNGVMDVVEESEGEGRVKERRSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERM-------------------------RRDFQFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGP-SLNEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVECLALILANP 512
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A835Z3A0_9STRA (SNF2-rel_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A0_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.900e-33 Identity = 74/135 (54.81%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 784 DFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQ---------------WMLDHERD--PRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITG------------GLLCEEMGLGKTIEVLSTI 1101
DF L+G+L+ AES GY PQP LTV LF +Q+S+ Q WMLDHE D P GLNGYFWERREWADGGAPLWYFPLAGE L PP TG GLLCEEMGLGKT+E ++ +
Sbjct: 420 DFKLSGLLRVAESEGYAWRVPQPPQLTVQLFEFQRSTYQXXXXXXXXXXXXXXXWMLDHEHDANPGGLNGYFWERREWADGGAPLWYFPLAGELGLHPPPRDTGEFXXXXXXXXXGGLLCEEMGLGKTVEAVARV 554
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A7S0DGF1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGF1_9EUKA) HSP 1 Score: 137 bits (344), Expect = 2.350e-31 Identity = 75/163 (46.01%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 781 YDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPR-GLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHD-----LHFDSARRLVSRATLIVVPVSLVGQW 1251
Y F+LAG+LK+ E SGYR PQP D+++ L YQ+ + WM DHE P GLN FWE R+W DGG+ +YFP AGE RL PP + GGLLCEEMGLGKT+E++S I+ + + S + KS D D + S TL++VP++L+ QW
Sbjct: 308 YIFTLAGLLKAHEHSGYREA-PQPRDVSLTLKTYQRQTLAWMQDHESLPNMGLNSLFWEERQWLDGGS-YYYFPAAGELRLERPPTVRGGLLCEEMGLGKTLEMVSLIVTDLQKNSLGS---YSKSPTPNFDSMECVTERDKTQEFESDTTLVIVPLTLLDQW 465
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A7S0NI25_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI25_MICPS) HSP 1 Score: 124 bits (312), Expect = 9.690e-31 Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILAN 1110
F+L G+L +A S GY QP +L + L +Q+ + WM D ER RGLNG FWE R WADGG WYFPLAGE RL+EPP + GG+L EEMGLGKT+EVL+ + A+
Sbjct: 10 FTLPGLLAAAVSDGYDEC-AQPPNLALPLMDFQRQTLAWMRDKERSERGLNGVFWEERRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEVLALVSAD 115
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC) HSP 1 Score: 125 bits (314), Expect = 3.030e-27 Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILAN 1110
F+L G+L +A S GY P P +L + L +Q+ + WM D ER RGLNG FWE R WADGG WYFPLAGE RL+EPP + GG+L EEMGLGKT+EVL+ + A+
Sbjct: 325 FTLPGLLAAAVSDGYDEC-PTPPNLALPLMDFQRQTLAWMRDKERSERGLNGVFWEERRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEVLALVSAD 430
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: F0XXK2_AURAN (FHA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXK2_AURAN) HSP 1 Score: 125 bits (314), Expect = 3.400e-27 Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 1
Query: 787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARR--LVSRATLIVVPVSLVGQWAE 1257
F+L G+++SAE G D QPA++ + + PYQ + +WM E RGLNG FWERR++ DGG +Y P GE RL PP + GGLL +EMG+GKT+E+LS + A P A ++ + RE D D A + SRATL+V+P +LV QW +
Sbjct: 1717 FTLEGVMRSAEHCG-GPEDAQPAEIALPMKPYQLMALRWMRSMEELDRGLNGLFWERRDFVDGGC-FYYAPDLGEARLEAPPTVHGGLLSDEMGMGKTLEMLSLVCARPATAAALAAADLAADEREAPD---DGAAKPLAASRATLLVLPPALVSQWLD 1870
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A7S3X1Z3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X1Z3_EMIHU) HSP 1 Score: 113 bits (283), Expect = 5.450e-26 Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERD---PRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILA 1107
FSL G+LKS E +GYR D QP L + L YQ + WM+D E + PRG+NG FWE R WADGG +Y GE RL PP GGLLC+EMGLGKT+EVL+ I+A
Sbjct: 64 FSLEGVLKSCEHTGYREAD-QPEGLALALKRYQLQALAWMVDMEDETLLPRGVNGLFWEVRPWADGGR-YYYSRALGEMRLQAPPFALGGLLCDEMGLGKTLEVLALIVA 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6478.17261.1 >prot_Ecto-sp13_S_contig6478.17261.1 ID=prot_Ecto-sp13_S_contig6478.17261.1|Name=mRNA_Ecto-sp13_S_contig6478.17261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=419bp SLKVECPSTVRTKLLATHKVNFVKIQSRVRRRRWCRGCIFGRRCFGDGRGback to top mRNA from alignment at Ecto-sp13_S_contig6478:1531..6192- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6478.17261.1 ID=mRNA_Ecto-sp13_S_contig6478.17261.1|Name=mRNA_Ecto-sp13_S_contig6478.17261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6478:1531..6192- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6478:1531..6192- >mRNA_Ecto-sp13_S_contig6478.17261.1 ID=mRNA_Ecto-sp13_S_contig6478.17261.1|Name=mRNA_Ecto-sp13_S_contig6478.17261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6478:1531..6192- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |