mRNA_Ecto-sp13_S_contig6478.17261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6478.17261.1
Unique NamemRNA_Ecto-sp13_S_contig6478.17261.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 539 bits (1388), Expect = 2.320e-174
Identity = 380/433 (87.76%), Postives = 387/433 (89.38%), Query Frame = 1
Query:    1 SLKVECPSTVRTKLLATHKVNFVKIQSRVRRRRWCRGCIFGRRCFGDGRGRRPAATHLRSPAARAWR-----GSMSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAASLPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARRLVSRATLIVVPVSLVGQWAE 1257
            +LKVEC STVRTKLLA+HKVNF+KIQSRVRRRRWCRGC  GR CFGDGRGRRPAATHLRSPAAR+ R     G  SPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIE+QPVQFVSTRPGLRRT AAS              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXX         RREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRD G+HSSL+HRKSLREQ D HFDSARRLVSRATLIVVPVSLVGQWAE
Sbjct:    5 TLKVECLSTVRTKLLASHKVNFLKIQSRVRRRRWCRGCP-GRCCFGDGRGRRPAATHLRSPAARSARVDDRHGPQSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEKQPVQFVSTRPGLRRTPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGVAAXXXXXXXXXXXXXXXXAAARREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDGGSHSSLKHRKSLREQPDRHFDSARRLVSRATLIVVPVSLVGQWAE 436          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 2.530e-86
Identity = 301/493 (61.05%), Postives = 315/493 (63.89%), Query Frame = 1
Query:    1 SLKVECPSTVRTKLLATHKVNFVKIQSR--VRRRRW----------------CR-----------GCIF-------------GRRCF---------------------------GDGRG--RRPAATHLRSPAARAWRGSMSPQSSPWKRPMLRALSTHVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAAS---LPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARRLVSRATLIVVPVSLVGQWAE 1257
            +LKV C S VRTKLLA HKVNFVKIQSR  +  R W                CR            C               G+R                             GDG G      A    + AA   +   + QSSPWKRPMLRALSTHV  + GL VTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPG+RRT AAS                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RREYDFSLAGILKSAESSGYRVVDPQ +  ++DL  +  +                                            EPPHITGGLLCEEMGLGKTIEVLSTILANPRD GAHSSLEHRKSLREQH  H+DS RRLVSRATLIVVPVSLVGQWAE
Sbjct:   55 TLKVACLSAVRTKLLAAHKVNFVKIQSRPCLVVRTWDQDGEFTSRAGEHVPVCRLLDAVTTGLVTSCAVVAPSSGTTISAAGGKRVGHTAAVGVGTSAAAXXXXXPPANDGCDGGDGTGDVSSAVAASETNEAADLLQHVYALQSSPWKRPMLRALSTHVPTDYGLAVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGVRRTPAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARREYDFSLAGILKSAESSGYRVVDPQASITSIDLADWSTAEL------------------------------------------EPPHITGGLLCEEMGLGKTIEVLSTILANPRDGGAHSSLEHRKSLREQHGRHYDSGRRLVSRATLIVVPVSLVGQWAE 505          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA)

HSP 1 Score: 151 bits (382), Expect = 7.520e-37
Identity = 107/318 (33.65%), Postives = 138/318 (43.40%), Query Frame = 1
Query:  214 PQSSPWKRPMLRALST---------------HVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAASLPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANP 1113
            PQSSPW+RPM+R L++                  A+  + VT+ +Y  RL+FELIA+     +M +L P   V   A +     +F  +  G  R S+    +  A  TSS                                                                                          RR++ FSL G+L +AES+GY V DPQP  LTV +F +Q+S+ QWMLD ER P  LN YFWERR W D        +YFP AGE RL +PPH TGG+LCEEMGLGKT+E L+ ILANP
Sbjct:  225 PQSSPWRRPMIRLLTSLQPPPAILLAPDEPEEEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSGAPRPSS----NATAGATSSNGVVDVVEESEGEGRVKERRSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERA-------------------------RRDFQFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGP-SLNEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVECLALILANP 512          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.910e-36
Identity = 113/337 (33.53%), Postives = 146/337 (43.32%), Query Frame = 1
Query:  157 PAATHLRSPAARAWRGSMSPQSSPWKRPMLRALSTHVS---------------AEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLRRTSAASLPSTVASGTSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAP---LWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANP 1113
            P  +H  S   R W    +PQSSPW+RPM+R L++  S               A+  + VT+ +Y  RL+FELIA+     +M +L P   V   A +     +F  +  G  R S+    +  A  TSS                                                                                          RR++ FSL G+L +AES+GY V DPQP  LTV +F +Q+S+ QWMLD ER P  LN YFWERR W D        +YFP AGE RL +PPH TGG+LCEEMGLGKT+E L+ ILANP
Sbjct:  208 PEESHA-SVMERLW-SLQNPQSSPWRRPMIRLLTSLQSPPAMLLAPDEPEKEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSGAPRPSS----NATAGATSSNGVMDVVEESEGEGRVKERRSEVGGEEASVGGVLEPGGGDHGPEQEATSVPGATEGLSATPWERM-------------------------RRDFQFSLPGLLHAAESTGYAVRDPQPRGLTVSMFEFQRSTLQWMLDRERGP-SLNEYFWERRAWKDAETAEECFYYFPDAGELRLEKPPHRTGGVLCEEMGLGKTVECLALILANP 512          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A835Z3A0_9STRA (SNF2-rel_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.900e-33
Identity = 74/135 (54.81%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  784 DFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQ---------------WMLDHERD--PRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITG------------GLLCEEMGLGKTIEVLSTI 1101
            DF L+G+L+ AES GY    PQP  LTV LF +Q+S+ Q               WMLDHE D  P GLNGYFWERREWADGGAPLWYFPLAGE  L  PP  TG            GLLCEEMGLGKT+E ++ +
Sbjct:  420 DFKLSGLLRVAESEGYAWRVPQPPQLTVQLFEFQRSTYQXXXXXXXXXXXXXXXWMLDHEHDANPGGLNGYFWERREWADGGAPLWYFPLAGELGLHPPPRDTGEFXXXXXXXXXGGLLCEEMGLGKTVEAVARV 554          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A7S0DGF1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGF1_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 2.350e-31
Identity = 75/163 (46.01%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  781 YDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPR-GLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHD-----LHFDSARRLVSRATLIVVPVSLVGQW 1251
            Y F+LAG+LK+ E SGYR   PQP D+++ L  YQ+ +  WM DHE  P  GLN  FWE R+W DGG+  +YFP AGE RL  PP + GGLLCEEMGLGKT+E++S I+ + +     S   + KS     D        D  +   S  TL++VP++L+ QW
Sbjct:  308 YIFTLAGLLKAHEHSGYREA-PQPRDVSLTLKTYQRQTLAWMQDHESLPNMGLNSLFWEERQWLDGGS-YYYFPAAGELRLERPPTVRGGLLCEEMGLGKTLEMVSLIVTDLQKNSLGS---YSKSPTPNFDSMECVTERDKTQEFESDTTLVIVPLTLLDQW 465          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A7S0NI25_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI25_MICPS)

HSP 1 Score: 124 bits (312), Expect = 9.690e-31
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILAN 1110
            F+L G+L +A S GY     QP +L + L  +Q+ +  WM D ER  RGLNG FWE R WADGG   WYFPLAGE RL+EPP + GG+L EEMGLGKT+EVL+ + A+
Sbjct:   10 FTLPGLLAAAVSDGYDEC-AQPPNLALPLMDFQRQTLAWMRDKERSERGLNGVFWEERRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEVLALVSAD 115          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC)

HSP 1 Score: 125 bits (314), Expect = 3.030e-27
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILAN 1110
            F+L G+L +A S GY    P P +L + L  +Q+ +  WM D ER  RGLNG FWE R WADGG   WYFPLAGE RL+EPP + GG+L EEMGLGKT+EVL+ + A+
Sbjct:  325 FTLPGLLAAAVSDGYDEC-PTPPNLALPLMDFQRQTLAWMRDKERSERGLNGVFWEERRWADGGK-YWYFPLAGELRLSEPPLVRGGMLSEEMGLGKTLEVLALVSAD 430          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: F0XXK2_AURAN (FHA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXK2_AURAN)

HSP 1 Score: 125 bits (314), Expect = 3.400e-27
Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARR--LVSRATLIVVPVSLVGQWAE 1257
            F+L G+++SAE  G    D QPA++ + + PYQ  + +WM   E   RGLNG FWERR++ DGG   +Y P  GE RL  PP + GGLL +EMG+GKT+E+LS + A P    A ++ +     RE  D   D A +    SRATL+V+P +LV QW +
Sbjct: 1717 FTLEGVMRSAEHCG-GPEDAQPAEIALPMKPYQLMALRWMRSMEELDRGLNGLFWERRDFVDGGC-FYYAPDLGEARLEAPPTVHGGLLSDEMGMGKTLEMLSLVCARPATAAALAAADLAADEREAPD---DGAAKPLAASRATLLVLPPALVSQWLD 1870          
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Match: A0A7S3X1Z3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X1Z3_EMIHU)

HSP 1 Score: 113 bits (283), Expect = 5.450e-26
Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:  787 FSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQWMLDHERD---PRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGLLCEEMGLGKTIEVLSTILA 1107
            FSL G+LKS E +GYR  D QP  L + L  YQ  +  WM+D E +   PRG+NG FWE R WADGG   +Y    GE RL  PP   GGLLC+EMGLGKT+EVL+ I+A
Sbjct:   64 FSLEGVLKSCEHTGYREAD-QPEGLALALKRYQLQALAWMVDMEDETLLPRGVNGLFWEVRPWADGGR-YYYSRALGEMRLQAPPFALGGLLCDEMGLGKTLEVLALIVA 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6478.17261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K8_ECTSI2.320e-17487.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHJ8_9PHAE2.530e-8661.05SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
W7TYI3_9STRA7.520e-3733.65Dna excision repair protein n=2 Tax=Nannochloropsi... [more]
A0A4D9CZ02_9STRA1.910e-3633.53Helicase ATP-binding domain-containing protein n=1... [more]
A0A835Z3A0_9STRA2.900e-3354.81SNF2-rel_dom domain-containing protein n=1 Tax=Tri... [more]
A0A7S0DGF1_9EUKA2.350e-3146.01Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0NI25_MICPS9.690e-3155.56Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1EH46_MICCC3.030e-2755.56SNF2 super family n=1 Tax=Micromonas commoda (stra... [more]
F0XXK2_AURAN3.400e-2744.03FHA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S3X1Z3_EMIHU5.450e-2654.55Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6478contigEcto-sp13_S_contig6478:1531..6192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score544.3
Seed ortholog evalue5.1e-152
Seed eggNOG ortholog2880.D7G2K8
Model size1257
KEGG koko:K15710,ko:K15711
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759
EC2.3.2.27
Cds size1257
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6478.17261.1prot_Ecto-sp13_S_contig6478.17261.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6478 1531..6192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.9161224-CDS-Ecto-sp13_S_contig6478:1530..17011681463893.9161224-CDS-Ecto-sp13_S_contig6478:1530..1701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 1531..1701 -
1681463893.9298406-CDS-Ecto-sp13_S_contig6478:2220..23471681463893.9298406-CDS-Ecto-sp13_S_contig6478:2220..2347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 2221..2347 -
1681463893.9400089-CDS-Ecto-sp13_S_contig6478:3122..32321681463893.9400089-CDS-Ecto-sp13_S_contig6478:3122..3232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 3123..3232 -
1681463893.957383-CDS-Ecto-sp13_S_contig6478:3814..42791681463893.957383-CDS-Ecto-sp13_S_contig6478:3814..4279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 3815..4279 -
1681463893.967377-CDS-Ecto-sp13_S_contig6478:4847..50211681463893.967377-CDS-Ecto-sp13_S_contig6478:4847..5021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 4848..5021 -
1681463893.9762962-CDS-Ecto-sp13_S_contig6478:5151..51771681463893.9762962-CDS-Ecto-sp13_S_contig6478:5151..5177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 5152..5177 -
1681463893.984747-CDS-Ecto-sp13_S_contig6478:5328..54291681463893.984747-CDS-Ecto-sp13_S_contig6478:5328..5429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 5329..5429 -
1681463893.9953072-CDS-Ecto-sp13_S_contig6478:6109..61921681463893.9953072-CDS-Ecto-sp13_S_contig6478:6109..6192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6478 6110..6192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6478.17261.1

>prot_Ecto-sp13_S_contig6478.17261.1 ID=prot_Ecto-sp13_S_contig6478.17261.1|Name=mRNA_Ecto-sp13_S_contig6478.17261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=419bp
SLKVECPSTVRTKLLATHKVNFVKIQSRVRRRRWCRGCIFGRRCFGDGRG
RRPAATHLRSPAARAWRGSMSPQSSPWKRPMLRALSTHVSAEDGLTVTYF
IYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPGLR
RTSAASLPSTVASGTSSGTAAAACGRAGANGGSSSSSSGRRGGSSAGGRG
NAQREEDRSKRGGRGGGGGRGGGGGSSTDLAAVAVAAMAATGRGGSDDSG
VAATAAARREYDFSLAGILKSAESSGYRVVDPQPADLTVDLFPYQQSSCQ
WMLDHERDPRGLNGYFWERREWADGGAPLWYFPLAGEFRLAEPPHITGGL
LCEEMGLGKTIEVLSTILANPRDEGAHSSLEHRKSLREQHDLHFDSARRL
VSRATLIVVPVSLVGQWAE
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mRNA from alignment at Ecto-sp13_S_contig6478:1531..6192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6478.17261.1 ID=mRNA_Ecto-sp13_S_contig6478.17261.1|Name=mRNA_Ecto-sp13_S_contig6478.17261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6478:1531..6192- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTTGAAGGTCGAGTGCCCGAGTACGGTCCGTACCAAGCTCCTCGCCAC GCACAAGGTCAATTTTGTGAAGATCCAGAGCAGGTGCGGCTTTTTTCCGT GGCACCGCCGTTCCCCCCCCCCGCCCCCCTCCGTTTGCCCTGTTCTCGTG TGCATGACAACGGCGCGATCTCGTAGGCGTGTTCGACAGAATTGTGTTGA ACTGGTAACGCAGTGTCCCGGAGAATGATCTCGTCCGTATCTCTGCTGCC CGAAGTAGGCTGCATCATTACCGGCCACAGCGATCGCGTGAAGTCGAACA GCAACAGCAAGATTGGCACCCCCCCCCCCCCTCCGATGCCGAGCAGATGT TTTGCGGTGTCACTTTTTGCGCCAACTATTATGATACAAAACCGTATTTC TCGGTTTTCGGTAAAGGGTGTGAGACCGTCAGCTGTCGCGCGACTCGAGC CGAGCAACCACGGAACCCCCTCCCCCCGCCCCGTGCTCTCTCTCTCCCCC TCCCTCAAAAACGCGTGCGTGAGAAAGGCCGTGCTTGGTGGTCCGGACGT GGGACCAGGACGGCGAGTTCACGAGCCGCGCCGGAGAGCACGTCCCCGTG TGCCGACTGCTGGACGCCGTCACGACCGGCCTGGTCACTTCGTGCGCGGT CGTCGCCCCTTCGTCGGGCACCACTACTAGTGCTGCTGCTGGGAAGAGGG TCGGTCATGCTGCTGCTGGTGTCGACGCCGCCGCCGCCGCCGCTGCCCCT CCGGCGAATGAAGGGTGCGACGGCGGCGATGGTGCCGGGGATGTATCTTC GGCCGTCGCTGCTTCGGAGACGGACGAGGCCGCCGACCTGCTGCAACACA TCTACGCTCTCCAGGTGCGCGAGCAAACCTGTTTTGGGGGTCGGGGAATG GGAGGTCGGCTACTGCTTGAGTAGCGCTGCGGCGTGTCTAGGTGTGCGGC GTAGTGAATTGGACGGCGTGACGTGGCGGTTATTGTGCGAGAAAACGCGC TGTGTTCGGTTGTAGCGGCGCGCGCTTGGCGCGGGTCGATGGTCGACCCT ACCGCAGGTACGAAGCCCTCGGATTGTTTTTGTCATCGTTGCATGTCTTC CTGTTGTCGAGGTTGATGTTGTGCTCTGTCGCCGCTACCACTGCCATTGT GGTCGTTGTCCGTTTTTTCAGTCTCCGCAGTCGTCCCCGTGGAAGCGGCC GATGCTGAGAGCCCTGAGCACGCACGTGTCCGCCGAAGACGGGTTGACCG TCACGTACTTCATCTACACCAGCAGGCTCCTCTTCGAGCTCATCGCGGAC CCCGCGATAAGCGGCATGATGAAGAGCCTCGAGCCCGTGGCGCAAGTACG TGGACAGCCGTTACGTTTCGTGTGTGCGCCTTTCCTTTTTTGTCGCTGCG GCGTAAAGCGGCGTTGTTGTTTCGGTCCCTTAATTTTAATTTTTTTTTTT AAATATACTTTCACTTGCTTGAAAAGACCAGATATGATCGTTCGAGATGA TAGTACCCAATTCGACTCCCGTTCGTTTGGTTCGGTGTCTTGATTGGGTA GGAGGGGATGCGTGATTTTGGAGGAGTTTCGTGTCGTGTTTAAGTGTGTT TTGAGGCTGGAACTCGCTTCGCAGGACGTAATTTATTGCAGTACCGTTGT GTTGTAGTACCTCTTGAACTGGTTGCTGATGTGTTGGTGTTGTTGTTCTG CTCCTTTTCGTGCCGTTGGTTCTAGTGTTTAGGGCATGTGTGATGACGCC TTCTCGAGACCACCTGTACCAGGAGCTGTGTACTTTTTATTCTGACCATT GTCCACAACGACAACCCCACGTCGCTTCAAGCGGCTCACCCTATACCCAC CCCGCCTCTACCCAAAATACTTGTTTCCCAACACAACCCCCCCCCACCCT CTCGCACTTGCAGGTGACACCCCCCGCCGTCATTGAGGAGCAGCCCGTGC AGTTCGTCTCCACCCGGCCAGGCTTACGACGGACCTCTGCCGCCTCCCTT CCTTCGACCGTTGCGTCGGGGACCTCCTCGGGCACCGCCGCCGCCGCTTG CGGCCGCGCGGGTGCCAACGGCGGCAGCAGCAGCAGCAGCAGTGGAAGGC GAGGGGGTAGTAGTGCAGGTGGTAGAGGGAACGCCCAGAGAGAGGAAGAC CGGAGTAAGCGGGGCGGCCGCGGCGGCGGCGGCGGCCGCGGCGGTGGTGG CGGCTCCAGTACTGACCTTGCTGCGGTTGCTGTTGCTGCTATGGCGGCGA CGGGTCGTGGTGGTAGCGATGACTCGGGCGTGGCGGCGACGGCTGCGGCG CGGCGGGAGTACGACTTCTCGCTGGCAGGGATACTGAAGTCGGCGGAGAG CTCCGGGTACCGGGTAGTTGACCCCCAGGTGCGTGTGTGTCTTCACTTTC AGCAGAGACCGCGCCTACCGGCTGAATAATGACCAGACATTGGGTAAGAT CAAAGTGTCTGTGTTTTGTTCTCAGCTTCGATCGGGCTAACCGGCTGACT GACCAACGAAAAGACGTCAGTCTCAATGTGGCTGAATATAGAATGTGCTT CTAAAGGCCATTATATGGGACCACGTGTAATATGGGACCACGTGTGTGTT TTTGTGAGCGTCGATCGCGCTAACAGACTGACCAATGAGAAGACGTGTTT CAGTAAGAACAGGCATCGATCACCAGCATCGACCTCACTGATTGGTCGAC CGCTGAATATGGTATGGTGGATTATCAAGGCAAACGCGCTTCCTTGTCCG CGCCCCCCCCCTCGAGACCGCAGGCTGTATTAGCATTATGAAGAGTGCTT CCGTTTTTGGACGCTTGTGCTTGTTTTGTTTTCCTGTTCACGCTTTTTTG TTTTCGTTCTGCGGGGAGAAACCCGCGGTGCACGTGATATTTGCGTGCTG CCTCTCTCGAACTCGTTGTTCAATCGCACTTTTCTACCGCTTCTCCCTGG TGTCGTCCAGCCGGCGGACCTGACGGTGGACCTTTTCCCGTACCAGCAAA GCAGCTGCCAGTGGATGCTGGACCACGAGAGGGATCCTCGCGGCCTCAAC GGATACTTCTGGGAAAGACGGTGCGTGCGGTAGAACGCGGTTTGTTCTTC TCATGTCCCAGTTTCTCTCTCGTTTCCGGTGTTTTTTGTAACTTTTTTCG GGATTGAAGAGGGGGGGAAAGAAGCACAACCGCAAGGTAAGGTAGGACCC CCGCAGCCTCATCGGTTCTTGCGGTCTACTGTGTTCTCCGGAAGCACGGC GGATGCAGATGAGGCAAGTACAGCAGTTCCCTTCATGCGCCGTCATTTCC CACCCTGCGTTGTTGTTACCATCACTTGTTTTCCCATGGGTACTCCATGA CGTAAATTTACACGGTGAAATACTGTTGTGCCTGCGTCCTACAATTACGT TGGTGTTAGCACAAAAATCCGTTCCTCTCAATCATTTTGGTTTGGTTTTG CCGCAAGCCCCTTGTCACTGTTGTCATGCGTTGGAATGAATGACTCGGCC GCACGGTCGTGTATTTCAGCCTCCGGTGTTGGTGACGCATGGCTTACCGT AGGCGTTTGTCCGCCGCACCTTTGCAGCTGTGGTTTGGTTACTGCTGTTG TTGCAGTGCTGCAGCTGCTGCTGCCGCGTTCGTGTTGCGTTGGCGCATCC AACAACAGCAACGACACACGCTGAGTGCTTGGTTCGGAGCATCAATAATT TTTATTTCCACACCTCGCGGCCACTACTTTACTGAAATATGGCGGCCACA GGCCTCCGTGTAGCGTGTGCAAACCCCCCGGTTATTCTCCCCTCTCTCCT CTCTAATCCCCACCCCCCCCCCTCCTGTCTGTTTATGTTCACCAGGGAGT GGGCGGATGGCGGGGCCCCGCTGTGGTACTTTCCCCTAGCGGGGGAGTTC CGCCTGGCGGAGCCGCCTCACATCACGGGGGGACTCCTCTGCGAGGAGAT GGGGCTCGGGAAAACGATAGAGGTGCGGCGTGATTAGCTTGCGTGGGGCG TGCATCGCGGGTAGTATCGTTGATGTGGTCTAGAGCGGCCGGTGCTTACA GCAGCGCTCGCTGGTCGTGCTCCCTGACGGCCGAAGCCGCACGGTAGGAC ATTAGAAACGCCCTCAAAACGTTTACCTTTTCTTCTCCCTCATGAGGACG CCTTCCTGCTACCCCATGTTTGTAGATTGGATAGGGAAAACGGTTTTGAG CCGCCGGAAGAAAAGACGATCGGCCATCGGTCATCGGTCCTTTGAGAGCA ATGCTCCGTCCGCTCGAAGACGCGTGGTCAATGGTCTAACAACTAAGATA CCCTAAATAATGAGTACGTCCCCCCCCGTTTCTAGGATGATGACCAGCGT CTGGTTCATCCTTGCGAAACGTAGTGTTAGCCTGGGCCGACGAAAACCCG GCATGTCGGTCGCTCCGTCCCGACATGTTAGGGATGCGAGCTCAATGCGT TTACATGAGCCACCCCCCCCCGTGTATATGCCTATGCAAAGGTGCTGTCG ACGATACTTGCAAACCCTCGCGACGAAGGCGCGCACTCCTCACTCGAGCA CCGCAAGTCCCTCCGGGAGCAGCACGACCTCCACTTCGACAGCGCGAGGA GGCTGGTGTCTCGCGCCACGCTCATCGTCGTGCCCGTGTCGCTCGTCGGA CAGTGGGCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6478:1531..6192-

>mRNA_Ecto-sp13_S_contig6478.17261.1 ID=mRNA_Ecto-sp13_S_contig6478.17261.1|Name=mRNA_Ecto-sp13_S_contig6478.17261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6478:1531..6192- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTTGAAGGTCGAGTGCCCGAGTACGGTCCGTACCAAGCTCCTCGCCAC
GCACAAGGTCAATTTTGTGAAGATCCAGAGCAGGGTGCGACGGCGGCGAT
GGTGCCGGGGATGTATCTTCGGCCGTCGCTGCTTCGGAGACGGACGAGGC
CGCCGACCTGCTGCAACACATCTACGCTCTCCAGCGGCGCGCGCTTGGCG
CGGGTCGATGTCTCCGCAGTCGTCCCCGTGGAAGCGGCCGATGCTGAGAG
CCCTGAGCACGCACGTGTCCGCCGAAGACGGGTTGACCGTCACGTACTTC
ATCTACACCAGCAGGCTCCTCTTCGAGCTCATCGCGGACCCCGCGATAAG
CGGCATGATGAAGAGCCTCGAGCCCGTGGCGCAAGTGACACCCCCCGCCG
TCATTGAGGAGCAGCCCGTGCAGTTCGTCTCCACCCGGCCAGGCTTACGA
CGGACCTCTGCCGCCTCCCTTCCTTCGACCGTTGCGTCGGGGACCTCCTC
GGGCACCGCCGCCGCCGCTTGCGGCCGCGCGGGTGCCAACGGCGGCAGCA
GCAGCAGCAGCAGTGGAAGGCGAGGGGGTAGTAGTGCAGGTGGTAGAGGG
AACGCCCAGAGAGAGGAAGACCGGAGTAAGCGGGGCGGCCGCGGCGGCGG
CGGCGGCCGCGGCGGTGGTGGCGGCTCCAGTACTGACCTTGCTGCGGTTG
CTGTTGCTGCTATGGCGGCGACGGGTCGTGGTGGTAGCGATGACTCGGGC
GTGGCGGCGACGGCTGCGGCGCGGCGGGAGTACGACTTCTCGCTGGCAGG
GATACTGAAGTCGGCGGAGAGCTCCGGGTACCGGGTAGTTGACCCCCAGC
CGGCGGACCTGACGGTGGACCTTTTCCCGTACCAGCAAAGCAGCTGCCAG
TGGATGCTGGACCACGAGAGGGATCCTCGCGGCCTCAACGGATACTTCTG
GGAAAGACGGGAGTGGGCGGATGGCGGGGCCCCGCTGTGGTACTTTCCCC
TAGCGGGGGAGTTCCGCCTGGCGGAGCCGCCTCACATCACGGGGGGACTC
CTCTGCGAGGAGATGGGGCTCGGGAAAACGATAGAGGTGCTGTCGACGAT
ACTTGCAAACCCTCGCGACGAAGGCGCGCACTCCTCACTCGAGCACCGCA
AGTCCCTCCGGGAGCAGCACGACCTCCACTTCGACAGCGCGAGGAGGCTG
GTGTCTCGCGCCACGCTCATCGTCGTGCCCGTGTCGCTCGTCGGACAGTG
GGCCGAG
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