mRNA_Ecto-sp13_S_contig6155.16851.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Match: D7FJ10_ECTSI (VPS37 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ10_ECTSI) HSP 1 Score: 538 bits (1385), Expect = 6.670e-184 Identity = 281/305 (92.13%), Postives = 285/305 (93.44%), Query Frame = 2
Query: 833 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGSVTTSGRDQASTVWGGPIAQQSSGFSGAPPAAGAFGLGNPPASHPVSGATGGAASAKGYTNMTSTSQRTGGEVQIRRARPPVHHTPIPDIPDTFSELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKTLQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF 1747
PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNG VTTSGR QASTVWGGPIAQ+ SG PPA GAFGLGNPP S+P ATGGAASAKG +MTST RTGGEVQ RR RPPVHHTPIPDIPDTF ELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELK LQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSE+VATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF
Sbjct: 74 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTSGRVQASTVWGGPIAQEP---SGTPPAVGAFGLGNPPVSYPAGRATGGAASAKGKAHMTSTDPRTGGEVQTRRMRPPVHHTPIPDIPDTFGELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKALQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSEQVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF 375
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Match: A0A835YJX2_9STRA (VPS37 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX2_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.300e-33 Identity = 121/336 (36.01%), Postives = 158/336 (47.02%), Query Frame = 2
Query: 833 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGSVTTSGR------------DQASTVWG--GPIAQQSSGFSGAP--------PAAGAFGLGNPPAS------HPVSGATGGAASAKGYTNMTSTSQ---RTGGEVQIRRARPPVHHTPIPDIPDTFSELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKTLQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF 1747
PVLQLLS V HPWVN YMQVVGHPDL W G I IV ++ E S G+ +T+G+ + AS GP Q S P P G G N + P G+ G G S SQ GG + H TPIP IP F+EL GL+ +L RL GD A ++ GM + M++L D+ KGN E A+ + LR+E +K EL + G G +AD + LK VK A+K AD SS+ VA FL R +FL+ F+ +RQRYH AA++EC+KR++ F
Sbjct: 87 PVLQLLSTVDHPWVNEYMQVVGHPDLALWRGNAGKPISVIVKEIMIEL--SGGTASTAGQALPQQPSQRMPTNAASFAHPSTGPQQWQQQQPSWRPDERKPNWTPPEGPIGAANGNSGGQFWRPQPSDGSQSGGGRVGGGAAQWSPSQVGAGGGGSSTDAKRVEEKHRTPIPAIPSRFAELDGLTEAQLRRLAGDGVALAQIVDGMASARGMRELLRDLAKGNAEVAKANMESSRKLDELRDEITALKMELHEAAA-----LNPVGVGAGASADHVTLKAVKEAAKDADQSSQAVADSFLAGRAGVGEFLEGFMAQRQRYHRCAARMECVKREMGF 415
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Match: A0A7S2HP11_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HP11_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 6.880e-14 Identity = 81/302 (26.82%), Postives = 131/302 (43.38%), Query Frame = 2
Query: 833 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGSVTTSGRDQASTVWGGPIAQQSSGFSGAPPAAGAFGLGNPPASHPVSGATGGAASAKGYTNMTSTSQRTGGEVQIRRARPPVHHTPIPDIPDTFSELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKTLQTSYEDKAHGG-GKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKR 1735
PVLQLL+P+ H W+N Y Q+VGHP L WD + +I+E S++ D +ST P ++ APP+ A + + P ST+ R R P TP+P IP F +L +S +L L D+ A QA L G +V M D+R V + N + A+ L ++D +LR E ++ L+ ++ ++ K + ++ +L+ ++ A AD SE VA+ + +F+ +L R+ +H A E R
Sbjct: 63 PVLQLLTPLKHHWINQYNQIVGHPYLSNWDSKFE------LTTLIKEVSEELKSLSRQQPDVSSTN---PASRH------APPSYRAAAMLDEP----------------------STTMRQPSPSPKRNDEPEPFKTPLPPIPAHFEDLDLMSVRELETLDRDDVAFQAHLFGFESVRTMCDMREQVIEENAKIAQSNLQRKDELELLRTEALTLQTTLQEIKERFDAKTRARVDADARKCSEGAVLETIRQAVDKADEESEDVASGLRSGDMSAGEFVKAYLPIRKSFHRRNAAQEYSHR 327
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Match: A0A7S2RS55_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS55_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.840e-12 Identity = 80/302 (26.49%), Postives = 131/302 (43.38%), Query Frame = 2
Query: 833 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGSVTTSGRDQASTVWGGPIAQQSSGFSGAPPAAGAFGLGNPPASHPVSGATGGAASAKGYTNMTSTSQRTGGEVQIRR--ARPPVHHT--PIPDIPDTFSELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKTLQTSYEDKAHGG-GKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIE 1723
P+LQLLSP HPWVN Y QV GH L W+ + +V + E R + + + + PP P H V ++R + RR A PP P+P++P +F++LQGL E+L +L D A ALL + +V ++ +R + + N AR TL K++ L+ E + EL+ L+T ++ K ++ + I + ++ ++ AD SE + T F ++ + +FL +L+ R+ YH A IE
Sbjct: 74 PILQLLSPFRHPWVNAYHQVTGHAYLSRWNEQYD--LTTLVKETLAELSRGTPAPQPAIXXXXXXXXXXXXXXXXAVRAPQPP----------PYEHQVXXXX----XXXXXXXXXXAAERRLSTPEQRRPSASPPRQEVSFPLPEVPSSFAQLQGLDRERLQKLDQDVVAFSALLHDLDSVKTLRSMREETIQENARIARETLDKREELEALQSEVLVSRLELQELETEFQTKLQSQLAQDSEKLSQAGIYEALRTSAAEADEKSEDLLTQFQDEDLGMAEFLKSYLELRKLYHRRTAAIE 359
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Match: UPI001EB06E8A (vacuolar protein sorting-associated protein 37A-like n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EB06E8A) HSP 1 Score: 71.2 bits (173), Expect = 1.940e-9 Identity = 80/310 (25.81%), Postives = 137/310 (44.19%), Query Frame = 2
Query: 833 PVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGSVTTSGRDQASTVWGGPIAQQSSGFSGAPPAAGAFGLGNPPASHPVSGATGGAASAKGYTNMTSTSQRTGGEV---QIRRARPPVHHTPIPDIPDTFSELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKTLQTSYEDKAHGGGKNMGGTADQM----ILKRVKHASKMADTSSERVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDI 1741
P + + P+THPWV+ M+VVG P+++ + + +G + +++EF ++ + Q P+A S G P GNP A +P+ G + R G + Q A P + P+PDI + EL+ +L L+ +E LL G+ + R R D+ V+ AR L KQ L++ K +EL ++ +E + +DQ I +K A A+ SE++A DFL+K++ ++FL ++++R HM AK E + + I
Sbjct: 72 PSVTVQPPLTHPWVDIQMKVVGCPNINNFSMHSD--LGVAIQTIVEEFKKTPPRILPHLVGQQFGAPQPPVAPVSG--PGYPL------YGNPQALYPLVGPP-------PLPPRAVENGREGPPILSDQDTNASSPAY--PVPDIMKAYPELKDKGLFELQELVDNEEKVLDLLQGLPELARFTQDREDISAQCVQLARENLTKQPVVEELKDSVLKKMSELDAIKGEFETHCE----HHLTLSDQFHPANIQTNLKVAVMEAEEESEKIADDFLDKKIDIEEFLQTYMQKRTLCHMRKAKEEKLNQII 358
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Match: UPI0015FFD016 (vacuolar protein sorting-associated protein 37A-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFD016) HSP 1 Score: 57.0 bits (136), Expect = 2.620e-5 Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 2
Query: 1169 TNMTSTSQRTGGEVQIRRARPPVHHT-PIPDIPDTFSELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKTLQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSERVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIE 1723
+ T+T+ EV+++ PV +PDIP++F E+ LS +L L +E+ L + ++ R + + AR L KQ + ++E + E L+ +++ + M MI +K A++ A+ S+ +A DFLE R+ +FL +F+++R H AK E
Sbjct: 30 STSTTTTPTARPEVRVQGNFSPVQFKYKMPDIPESFEEVNSLSVAELKELHDNETKVVDLFSSLPQCQQLYQDRDKLNDATEQLARQNLDKQPMLELKKKELIEKVDEQNELRRAFDKSSQRQNDLMDQFKPAMIQANLKVAAQQAEEESDVIAEDFLEGRMEMDEFLQKFMEKRVLCHTRHAKEE 215 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6155.16851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6155.16851.1 >prot_Ecto-sp13_S_contig6155.16851.1 ID=prot_Ecto-sp13_S_contig6155.16851.1|Name=mRNA_Ecto-sp13_S_contig6155.16851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp MPSGGLPVLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVback to top mRNA from alignment at Ecto-sp13_S_contig6155:3111..5886+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6155.16851.1 ID=mRNA_Ecto-sp13_S_contig6155.16851.1|Name=mRNA_Ecto-sp13_S_contig6155.16851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6155:3111..5886+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6155:3111..5886+ >mRNA_Ecto-sp13_S_contig6155.16851.1 ID=mRNA_Ecto-sp13_S_contig6155.16851.1|Name=mRNA_Ecto-sp13_S_contig6155.16851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6155:3111..5886+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |