mRNA_Ecto-sp13_S_contig101376.165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig101376.165.1
Unique Name	mRNA_Ecto-sp13_S_contig101376.165.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.240e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1

Query:    1 RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFSFPSFAK 147
            RFVRRKSGEPWLGILIPD+TGVVPTERLLFQKIPFIEDVRAF+FPSFAK
Sbjct:  356 RFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 404

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JXB1_9PHAE	1.240e-23	95.92	Ku domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig101376	contig	Ecto-sp13_S_contig101376:1..156 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	101.3
Seed ortholog evalue	1.4e-19
Seed eggNOG ortholog	2880.D7FY60
Preferred name	YKU80
Model size	156
KEGG ko	ko:K10885
KEGG Pathway	ko03450,map03450
KEGG Module	M00297
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons	1
EggNOG free text desc.	double-strand break repair via nonhomologous end joining
EggNOG OGs	KOG2326@1,KOG2326@2759
Cds size	156
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03400

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462510.1316886-CDS-Ecto-sp13_S_contig101376:0..156	1681462510.1316886-CDS-Ecto-sp13_S_contig101376:0..156	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig101376 1..156 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig101376.165.1	prot_Ecto-sp13_S_contig101376.165.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig101376 1..156 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig101376:1..156+
coding sequence from alignment at Ecto-sp13_S_contig101376:1..156+

protein sequence of mRNA_Ecto-sp13_S_contig101376.165.1

>prot_Ecto-sp13_S_contig101376.165.1 ID=prot_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFSFPSFAKV
R*

mRNA from alignment at Ecto-sp13_S_contig101376:1..156+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig101376.165.1 ID=mRNA_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101376:1..156+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTTCGTCAGGAGAAAGTCGGGGGAGCCGTGGCTGGGAATTTTGATCCC
GGACTCTACGGGGGTGGTGCCGACGGAGCGGCTCCTGTTCCAGAAGATCC
CATTCATCGAGGACGTCCGAGCCTTCAGCTTTCCATCCTTTGCGAAGGTG
CGGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101376:1..156+

>mRNA_Ecto-sp13_S_contig101376.165.1 ID=mRNA_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101376:1..156+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTTCGTCAGGAGAAAGTCGGGGGAGCCGTGGCTGGGAATTTTGATCCC
GGACTCTACGGGGGTGGTGCCGACGGAGCGGCTCCTGTTCCAGAAGATCC
CATTCATCGAGGACGTCCGAGCCTTCAGCTTTCCATCCTTTGCGAAGGTG
CGGTAG