Homology
BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot
Match:
A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)
HSP 1 Score: 100 bits (250), Expect = 1.240e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0
Query: 1 RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFSFPSFAK 49
RFVRRKSGEPWLGILIPD+TGVVPTERLLFQKIPFIEDVRAF+FPSFAK
Sbjct: 356 RFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 1
R F V R R K S G E P W L G I L I P D S T G V V P T E R L L F Q K I P F I E D V R A F S F P S F A K V R * 5 10 15 20 25 30 35 40 45 50 Expect = 1.24e-23 / Id = 95.92 Sequence A0A6H5JXB1_9PHAE
Match Name E-value Identity Description
A0A6H5JXB1_9PHAE 1.240e-23 95.92 Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
R F V R R K S G E P W L G I L I P D S T G V V P T E R L L F Q K I P F I E D V R A F S F P S F A K V R * 5 10 15 20 25 30 35 40 45 50 Expect = 4.8E-6 / Score = 26.4 Expect = 5.8E-8 / Score = 34.5 Score = Sequence PF02735 G3DSA:2.40.290.10 SSF100939
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_Ecto-sp13_S_contig101376.165.1 ID=prot_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR006164 Ku70/Ku80_beta-barrel_dom IPR016194 SPOC-like_C_dom_sf