mRNA_Ecto-sp13_S_contig101376.165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101376.165.1
Unique NamemRNA_Ecto-sp13_S_contig101376.165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.240e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFSFPSFAK 147
            RFVRRKSGEPWLGILIPD+TGVVPTERLLFQKIPFIEDVRAF+FPSFAK
Sbjct:  356 RFVRRKSGEPWLGILIPDTTGVVPTERLLFQKIPFIEDVRAFNFPSFAK 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101376.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE1.240e-2395.92Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101376contigEcto-sp13_S_contig101376:1..156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score101.3
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7FY60
Preferred nameYKU80
Model size156
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2326@1,KOG2326@2759
Cds size156
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.1316886-CDS-Ecto-sp13_S_contig101376:0..1561681462510.1316886-CDS-Ecto-sp13_S_contig101376:0..156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101376 1..156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101376.165.1prot_Ecto-sp13_S_contig101376.165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101376 1..156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101376.165.1

>prot_Ecto-sp13_S_contig101376.165.1 ID=prot_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RFVRRKSGEPWLGILIPDSTGVVPTERLLFQKIPFIEDVRAFSFPSFAKV
R*
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mRNA from alignment at Ecto-sp13_S_contig101376:1..156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101376.165.1 ID=mRNA_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101376:1..156+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTTCGTCAGGAGAAAGTCGGGGGAGCCGTGGCTGGGAATTTTGATCCC
GGACTCTACGGGGGTGGTGCCGACGGAGCGGCTCCTGTTCCAGAAGATCC
CATTCATCGAGGACGTCCGAGCCTTCAGCTTTCCATCCTTTGCGAAGGTG
CGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101376:1..156+

>mRNA_Ecto-sp13_S_contig101376.165.1 ID=mRNA_Ecto-sp13_S_contig101376.165.1|Name=mRNA_Ecto-sp13_S_contig101376.165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101376:1..156+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTTCGTCAGGAGAAAGTCGGGGGAGCCGTGGCTGGGAATTTTGATCCC
GGACTCTACGGGGGTGGTGCCGACGGAGCGGCTCCTGTTCCAGAAGATCC
CATTCATCGAGGACGTCCGAGCCTTCAGCTTTCCATCCTTTGCGAAGGTG
CGGTAG
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