prot_Ecto-sp13_S_contig10063.87.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10063.87.1
Unique Nameprot_Ecto-sp13_S_contig10063.87.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length320
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.920e-97
Identity = 271/320 (84.69%), Postives = 272/320 (85.00%), Query Frame = 0 
Query:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGQTVTGANTTAAGTPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 320
            MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGG TVTGAN TAAGTPTG  RPGLSSSL           XXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXL SVPAAMGD ATGGG+SPAVVPPLGVVA HQQGEGVAA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  R AAAAPAFVPTAA AGWRQRDPAGPTT
Sbjct:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGHTVTGANATAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATGGGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTRVAAAAPAFVPTAAAAGWRQRDPAGPTT 320
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BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.170e-18
Identity = 196/278 (70.50%), Postives = 201/278 (72.30%), Query Frame = 0 
Query:   60 RLGGDAR-----VPVSRELILALAAKKKELLALCESKLRTPR---------SIRGGGGQTVTGANTTAAG---TPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 320
            RL G A+     V V     LA A       +   S  R+PR         SIRG GG TVTGAN TAAG   TPTG  RPGLSSSL           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LGSVPAAM DPATGGG+SPAVVPPLGVVA  QQGEG +A           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      PAFVPTAA AGWRQRDPAGPTT
Sbjct:  163 RLRGSAKSCFLAVGVDDGGFLAAAVFSASSRSTAFSSRRSPRGPTGRRLLGSIRGAGGHTVTGANATAAGAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGSVPAAMADPATGGGVSPAVVPPLGVVA-RQQGEGFSAAAEPDPMVVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFVPTAAAAGWRQRDPAGPTT 439
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSS4_ECTSI2.920e-9784.69Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE6.170e-1870.50RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10063contigEcto-sp13_S_contig10063:3..3589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10063.87.1mRNA_Ecto-sp13_S_contig10063.87.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10063 3..3589 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10063.87.1 ID=prot_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIV
NDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRG
GGGQTVTGANTTAAGTPTGGGRPGLSSSLQHYRQQGNPSTSPPDPAAAAA
GTAHHAVVFPPPAALAAMQSSAMAAGSASVAVPVARDGGGGGSTSGRGGG
GGLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAAAGPDPMVV
EGSGGGGGDGDGSVEQSGVSIESSTASSGPSPPPPPRPPTVTRSAAAAPA
FVPTAAVAGWRQRDPAGPTT
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