Homology
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match:
D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)
HSP 1 Score: 302 bits (773), Expect = 2.920e-97
Identity = 271/320 (84.69%), Postives = 272/320 (85.00%), Query Frame = 1
Query: 1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGQTVTGANTTAAGTPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 960
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGG TVTGAN TAAGTPTG RPGLSSSL XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXL SVPAAMGD ATGGG+SPAVVPPLGVVA HQQGEGVAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R AAAAPAFVPTAA AGWRQRDPAGPTT
Sbjct: 1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSIRGGGGHTVTGANATAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATGGGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTRVAAAAPAFVPTAAAAGWRQRDPAGPTT 320
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Match:
A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 6.170e-18
Identity = 196/278 (70.50%), Postives = 201/278 (72.30%), Query Frame = 1
Query: 178 RLGGDAR-----VPVSRELILALAAKKKELLALCESKLRTPR---------SIRGGGGQTVTGANTTAAG---TPTGXXRPGLSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSVPAAMGDPATGGGLSPAVVPPLGVVAIHQQGEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAAAPAFVPTAAVAGWRQRDPAGPTT 960
RL G A+ V V LA A + S R+PR SIRG GG TVTGAN TAAG TPTG RPGLSSSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LGSVPAAM DPATGGG+SPAVVPPLGVVA QQGEG +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PAFVPTAA AGWRQRDPAGPTT
Sbjct: 163 RLRGSAKSCFLAVGVDDGGFLAAAVFSASSRSTAFSSRRSPRGPTGRRLLGSIRGAGGHTVTGANATAAGAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGSVPAAMADPATGGGVSPAVVPPLGVVA-RQQGEGFSAAAEPDPMVVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFVPTAAAAGWRQRDPAGPTT 439
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10063.87.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.92e-97 / Id = 84.69 Expect = 6.17e-18 / Id = 70.50 Sequence D7FSS4_ECTSI A0A6H5L5V4_9PHAE
Match Name E-value Identity Description
D7FSS4_ECTSI 2.920e-97 84.69 Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5L5V4_9PHAE 6.170e-18 70.50 RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 960 Hectar predicted targeting category other localisation Exons 4 Cds size 960
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462504.4925313-CDS-Ecto-sp13_S_contig10063:2..146 1681462504.4925313-CDS-Ecto-sp13_S_contig10063:2..146 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10063 3..146 - 1681462504.5096312-CDS-Ecto-sp13_S_contig10063:926..1455 1681462504.5096312-CDS-Ecto-sp13_S_contig10063:926..1455 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10063 927..1455 - 1681462504.5202208-CDS-Ecto-sp13_S_contig10063:2398..2550 1681462504.5202208-CDS-Ecto-sp13_S_contig10063:2398..2550 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10063 2399..2550 - 1681462504.5284293-CDS-Ecto-sp13_S_contig10063:3454..3589 1681462504.5284293-CDS-Ecto-sp13_S_contig10063:3454..3589 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10063 3455..3589 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10063.87.1
>prot_Ecto-sp13_S_contig10063.87.1 ID=prot_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIV back to top mRNA from alignment at Ecto-sp13_S_contig10063:3..3589-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10063.87.1 ID=mRNA_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10063:3..3589- (Ectocarpus species13 EcNAP12_S_4_19m)ATGTCGCAGTACCAACAGCACCCGGCGCCGGCCTCGGGAGTGGTTGATGA
CGCGGGCGAGGCGTTCGCTCGGGCGGTGTTCTGCCGCTTCCTACGCCAGG
CCACCATCTCCCGAGACATCGATGACGTCATTGAG GTGAACACCCTAATC
TCCGTGTCTGCCAACAGCTTGGTGTCTAGGTGCTGCTGGCATGGGAGAGA
ATTAAGGGGAGTCTAGTCCTCTTGCGGCAATGTTGACGCCATTGAGGTGA
AACCCGGCCCGCTTAGGCTGGCCTTTCGTAGCTCACACTTCTGTGCTGTT
AGACTGGGGTCTGTCGCCCGAGACATGGATGGCTCCGTCGAAGTGCGAGG
TGCATCTGTCTACCAACCTTCGTAGCTACACTGCTGTGTGTGAGACTGGG
GTCTTGGTTCGCGTTATTTTTGGGTTGGTTCAATCGTTGGTTTGCTTTTG
TTACAAATCGTTCAATCGTTGGTGTAAATCGTCGGGTTCACACCAATCTT
TGATTAAGCCGCGCATGTTTTTCGGACGGTTTTCGCGTAATTTTGATTAT
TGCTGCCCGAGGAGAGACACGTTTGGAAACACGAAGGACCTCTCGAGGAA
GAATGAGCGAGTGCAATTTGATCCAGTATGCTGCCGTCGCTCCCTGGCAA
AATGCCGTCAAGAATAATTGTTCGTCTCTGGCCTTTTTTCCATTTCGTTA
TTATCATTGAAAACGAAAAACGACCCGCGAACCGGTATCACGCTACAGTT
GAGGACGAACGCCGAACAGGACCAATAAAGAATTGGTCGCTATTCTGTTT
TTTTTCTTGAGGAACAAGCGCAGCGCGTAATGGCGGACAAGGGGGGGAAC
CGACAGCGTCAATATCTCCCACGTCTCTCACCACACGGCAACGCATCACA
TTGTCGAATAGTGGTGCAGTTCAAACACGCTCCAGATCAGGGTTTCACTG
GACTCAACAGCCTGCGGTTCTCTTTGTCGACCTCCCGTGCCTTTGCTTTC
TTGTTGCGATTGACACGTGCGTCTTGCGCGTACGTGTAGCACATGCACAT
CGTCAACGACGACTCCCAGACGTTCGCGATCCGGCTCGGGGGGGACGCGC
GGGTCCCCGTGAGCCGAGAGCTCATCCTAGCCCTGGCGGCCAAGAAGAAG
GAGCTGCTGGCGCTGTGCGAGTCGAAGCTGAGGACGCCAAG GTGGGGGGT
CGTTTTCCTTTCGCCCCTCGTGTGTGCATGTCGCAAAACAGGAGAGATAG
GAGAGGCATCTGCTTTTTTTTTTTGGTATACATGGGGCATTTGAGGGCGA
CCGGGGCGGGGTCGTCTTGCAGTCAGTAGCGAGCGATGCTCCTTCGAGGC
CGGCCGACACACCCTCTTCCATTATTTCTAGTCGCTCCGACCCCACACCA
GTCGCAGGGGGCTACTGCACGTGGTAGGACCTCCTGAGGCTCAGGGTACT
TCTGCCGTTCGTCTCTCTGATACATCTTGTACCGCCTCTATGGGTTCCTC
GTTCGGGTGTACCGTTTAAGTCTCACTCTTCTTTGGAAATAAAGGGGGCT
ACGCTAGTAAGGTAGGAGGTTTTGGCGCTCAGGGCTTGTCGACAGTTGGT
GTCTCCCATAATGTGCAGCCTCTCTGGACCCCTTCAACGGTACTCTTCAA
GCAGTATCAGTCAGTACCGAAAACAACAGCCGAAACTCCTTGCAGAGACA
GGCATCGGTCCTTGATTTCCATCCCGAACCTACTCCTGAAATCTGAGTTA
ACAGACCACGTTCCCCGAAATTTTCGTGAACACACATGTTTCCCCGCTCG
TTTCTTTGTCCGCCCGTCTACCAGACGGCTATTTATCATGCCGATCTCTC
CCAATCAAAGCGTGTAAAGGGCTACCGAGGGCCATAAAATTGAATGGCGT
GTGCCTAGTCGAAGAACAGTATCGCTGTCACCGCCGAACAGTATCGCCGT
CACCGCCGATTTTTTCAGCTGTCCTTCCTGTGAATCTACCTGTCATATTC
CTGTTCGTCTGTCTGTCTGCGTCTGTTTGTCCGTTTGTGTCTGTCTGTCT
GTCTGATTGTGTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCTCTCTCCCC
CGCTCTCCCCCCTTCTCTCCCTCTCTTGTCTCAGGTCGATCAGGGGCGGC
GGCGGGCAAACCGTCACCGGGGCCAACACAACCGCCGCAGGAACGCCGAC
CGGCGGCGGCCGCCCCGGTCTGTCGTCTTCCTTGCAGCACTACCGACAGC
AAGGGAACCCGAGCACCAGCCCGCCCGATCCCGCGGCTGCGGCAGCGGGG
ACAGCGCATCACGCGGTCGTTTTTCCGCCGCCAGCAGCCCTCGCCGCCAT
GCAGTCCTCGGCAATGGCGGCGGGGTCGGCGTCGGTGGCAGTGCCCGTCG
CGCGAGACGGCGGCGGCGGCGGGAGCACTAGCGGTCGTGGGGGTGGTGGT
GGTCTTGGTTCGGTGCCGGCAGCGATGGGGGACCCGGCGACGGGGGGGGG
GCTGTCACCAGCCGTGGTGCCCCCCTTGGGGGTGGTCGCAATACATCAGC
AGGGGGAGGGGGTTGCGGCGGCGGCGGGACCAGACCCGATGGTTGTCGAA
GGCTCGGGTGGCGGCGGTGGCGATGGTGACGGGTCGGTGGAGCAATCGGG
GGTATCAATAGAG GTACGATAACCTGGCGGATTGGCTGCTGTTCGCTTGG
CGTGCGGTGGCTGCGGTACCGCGTCGCCGTATGGTGGGCAGAGGCCATGG
CCAGGGTTTTGCGACAGATGGCGGTTTCGCCTGTTAGCTTGGTGGTGATC
CGTCCCATGTTGATCCGTCCCGTATACGGCTGCTTCCCTGGACTACTGTG
TTTGTGAGCGTGAGCGTGTCTTTGTTTCTTCGGGGCATTACATTGCCGGC
GTAAACCTGCTGATCAATGAAAACACGCCGGTCTCGGTGTGGCTGAGGAC
GAAAAAACCCTTCGAGAGGCAACACGCTTGTGTTTCGTGTTCCGTGTTTG
TGTCTTAGTCTCGCTTCGAACGCCCTGGTGGGCTGGCCAACAACAAAGCA
GTATTGTAGTCTCACATATTGTGGGAAAAAGGAAAAGTGCATGCGATTTG
TACGCATAGGTGCTACATGAACACATCGACCGCGCTAACCGTTCGACCAT
TGAAAATACGTCGATCATGTTGCCGGACGAAGAAGGCTCGGACGGTACCT
TCTCCACAGACCCCCAGGGGGGGACACGCTGGCCGTGTGTTGACATAGGC
GTCGGCGTTTGTCAAGCAAGGGTAGACCACGCTGACTGTAGTACGATGGC
ACGTGGCACCCCTTTGTGTTGTACCGGTTTCGAGCTCATCTTTTATCCTA
CGCTTCCCGACCTGCATGAGAAACTTCATTTGTTTTTGGCGTCGTTCATA
GTCCCGACCCCCTCCATCGTTTCTGAAATAACTATTCCGGCAGTCGTCGA
CGGCGTCTTCGGGCCCTTCGCCTCCTCCACCACCCCGCCCACCAACGGTG
ACCCGTTCTGCGGCGGCCGCTCCCGCCTTCGTGCCGACGGCTGCGGTGGC
CGGGTGGAGACAGCGAGACCCGGCAGGGCCCACAACG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10063:3..3589-
>mRNA_Ecto-sp13_S_contig10063.87.1 ID=mRNA_Ecto-sp13_S_contig10063.87.1|Name=mRNA_Ecto-sp13_S_contig10063.87.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10063:3..3589- (Ectocarpus species13 EcNAP12_S_4_19m) back to top