prot_Ecto-sp13_S_contig100607.83.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig100607.83.1
Unique Nameprot_Ecto-sp13_S_contig100607.83.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length63
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100607.83.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.020e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    9 ILKMNTRAKEAEGYLRRALRIFSEKLGATDTKASTAMYDLGRCLSLAGQTR 59
            ILKMNTRAKEAEGYLRRALRIFSEKLGATDT ASTAMYDLGRCLSLAGQTR
Sbjct:  878 ILKMNTRAKEAEGYLRRALRIFSEKLGATDTTASTAMYDLGRCLSLAGQTR 928
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100607.83.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI56_9PHAE8.020e-2398.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13424TPR_12coord: 2..63
e-value: 1.4E-10
score: 41.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..63
e-value: 5.4E-10
score: 40.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100607contigEcto-sp13_S_contig100607:321..509 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100607.83.1mRNA_Ecto-sp13_S_contig100607.83.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig100607 321..509 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig100607.83.1 ID=prot_Ecto-sp13_S_contig100607.83.1|Name=mRNA_Ecto-sp13_S_contig100607.83.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
TLHSLGLCILKMNTRAKEAEGYLRRALRIFSEKLGATDTKASTAMYDLGR
CLSLAGQTREAEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf