Homology
BLAST of mRNA_Ecto-sp13_S_contig100607.83.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 8.020e-23 Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 25 ILKMNTRAKEAEGYLRRALRIFSEKLGATDTKASTAMYDLGRCLSLAGQTR 177
ILKMNTRAKEAEGYLRRALRIFSEKLGATDT ASTAMYDLGRCLSLAGQTR
Sbjct: 878 ILKMNTRAKEAEGYLRRALRIFSEKLGATDTTASTAMYDLGRCLSLAGQTR 928
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 189 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 189 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462504.3180058-CDS-Ecto-sp13_S_contig100607:320..509 | 1681462504.3180058-CDS-Ecto-sp13_S_contig100607:320..509 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig100607 321..509 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100607.83.1 >prot_Ecto-sp13_S_contig100607.83.1 ID=prot_Ecto-sp13_S_contig100607.83.1|Name=mRNA_Ecto-sp13_S_contig100607.83.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
TLHSLGLCILKMNTRAKEAEGYLRRALRIFSEKLGATDTKASTAMYDLGR
CLSLAGQTREAEE back to topmRNA from alignment at Ecto-sp13_S_contig100607:321..509+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig100607.83.1 ID=mRNA_Ecto-sp13_S_contig100607.83.1|Name=mRNA_Ecto-sp13_S_contig100607.83.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100607:321..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTACACTCCCTCGGCTTGTGCATTTTGAAAATGAATACCAGAGCCAA
GGAAGCCGAAGGATATCTCCGTAGAGCGCTACGGATCTTCTCGGAGAAGC
TGGGAGCGACAGACACCAAGGCTTCTACCGCAATGTACGACCTCGGACGC
TGTCTTTCGTTGGCAGGGCAGACCAGAGAAGCTGAAGAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig100607:321..509+ >mRNA_Ecto-sp13_S_contig100607.83.1 ID=mRNA_Ecto-sp13_S_contig100607.83.1|Name=mRNA_Ecto-sp13_S_contig100607.83.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100607:321..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTACACTCCCTCGGCTTGTGCATTTTGAAAATGAATACCAGAGCCAA
GGAAGCCGAAGGATATCTCCGTAGAGCGCTACGGATCTTCTCGGAGAAGC
TGGGAGCGACAGACACCAAGGCTTCTACCGCAATGTACGACCTCGGACGC
TGTCTTTCGTTGGCAGGGCAGACCAGAGAAGCTGAAGAG back to top
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