Homology
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match:
D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)
HSP 1 Score: 518 bits (1333), Expect = 1.050e-174
Identity = 301/315 (95.56%), Postives = 308/315 (97.78%), Query Frame = 0
Query: 1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSS-RSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 314
GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSS RS+FRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAAL RSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLEL+GLDLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSF+RPTSTREN GRGLSP QAEASDAGDFALGLMEEMKREGVEPDIITYG
Sbjct: 65 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSRSSFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYG 379
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match:
A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)
HSP 1 Score: 493 bits (1268), Expect = 2.250e-164
Identity = 290/314 (92.36%), Postives = 297/314 (94.59%), Query Frame = 0
Query: 1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSSRSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 314
GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSSRSNFRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGP KN +MRAVLEDAKLELQG+DLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSFMRPTST AEASDAGDFALGLM+EMKREGVEPDIITYG
Sbjct: 147 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMRAVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYG 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 2
G V A A D N A C L G H V A T A C A R A Q M F E T A L A M V R G M V S K G H S V T R T Y N N I M L A I V N G Q A F T S R T S S R S N F R R S A L S N M E C E A A V G L L G E M Q A C G A H P T V F T Y N L L I A A L T R S R R P H S E V L N L L D Q M R C D G I K P D S Y T Y V G V V K G I Q G P K K N A M M R A V L E D A K L E L Q G L D L S A V Y S A V V S G Y A M D G S W E D A S A L V D E M F A N D V P R D E Y T Y C A A M N A C K E A G K W M Q A A A F L P R M R A D G V P P N T I A Y N T A I G A C A F F G R P H K A W N N N R E T S S F M R P T S T R E N I G R G L S P V Q A E A S D A G D F A L G L M E E M K R E G V E P D I I T Y G * 50 100 150 200 250 300 Expect = 1.05e-174 / Id = 95.56 Expect = 2.25e-164 / Id = 92.36 Sequence D7FXW0_ECTSI A0A6H5KVR3_9PHAE
Match Name E-value Identity Description
D7FXW0_ECTSI 1.050e-174 95.56 PPR_long domain-containing protein n=1 Tax=Ectocar... [more] A0A6H5KVR3_9PHAE 2.250e-164 92.36 PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
G V A A D N A C L G H V A T A C A R A Q M F E T A L A M V R G M V S K G H S V T R T Y N N I M L A I V N G Q A F T S R T S S R S N F R R S A L S N M E C E A A V G L L G E M Q A C G A H P T V F T Y N L L I A A L T R S R R P H S E V L N L L D Q M R C D G I K P D S Y T Y V G V V K G I Q G P K K N A M M R A V L E D A K L E L Q G L D L S A V Y S A V V S G Y A M D G S W E D A S A L V D E M F A N D V P R D E Y T Y C A A M N A C K E A G K W M Q A A A F L P R M R A D G V P P N T I A Y N T A I G A C A F F G R P H K A W N N N R E T S S F M R P T S T R E N I G R G L S P V Q A E A S D A G D F A L G L M E E M K R E G V E P D I I T Y G * 50 100 150 200 250 300 Expect = 1.9E-6 / Score = 25.7 Expect = 6.4E-5 / Score = 20.9 Expect = 8.0E-10 / Score = 38.8 Expect = 3.1E-7 / Score = 30.4 Score = 6.96 Score = 5.031 Score = 10.326 Score = 8.385 Score = 5.338 Score = 11.148 Expect = 2.9E-17 / Score = 65.2 Expect = 2.4E-19 / Score = 72.0 Score = Score = Sequence TIGR00756 PF13041 PF13812 PS51375 PS51375 PS51375 PS51375 PS51375 PS51375 G3DSA:1.25.40.10 PTHR46128
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_Ecto-sp13_S_contig10052.76.1 ID=prot_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR002885 Pentatricopeptide_repeat IPR011990 TPR-like_helical_dom_sf