Homology
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match:
D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)
HSP 1 Score: 518 bits (1333), Expect = 1.050e-174
Identity = 301/315 (95.56%), Postives = 308/315 (97.78%), Query Frame = 1
Query: 1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSS-RSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 942
GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSS RS+FRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAAL RSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLEL+GLDLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSF+RPTSTREN GRGLSP QAEASDAGDFALGLMEEMKREGVEPDIITYG
Sbjct: 65 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSRSSFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYG 379
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match:
A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)
HSP 1 Score: 493 bits (1268), Expect = 2.250e-164
Identity = 290/314 (92.36%), Postives = 297/314 (94.59%), Query Frame = 1
Query: 1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSSRSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 942
GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSSRSNFRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGP KN +MRAVLEDAKLELQG+DLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSFMRPTST AEASDAGDFALGLM+EMKREGVEPDIITYG
Sbjct: 147 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMRAVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYG 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.05e-174 / Id = 95.56 Expect = 2.25e-164 / Id = 92.36 Sequence D7FXW0_ECTSI A0A6H5KVR3_9PHAE
Match Name E-value Identity Description
D7FXW0_ECTSI 1.050e-174 95.56 PPR_long domain-containing protein n=1 Tax=Ectocar... [more] A0A6H5KVR3_9PHAE 2.250e-164 92.36 PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 0 Seed ortholog score 522.7 Seed ortholog evalue 1.2e-145 Seed eggNOG ortholog 2880.D7FXW0 Model size 945 Hectar predicted targeting category other localisation Exons 6 EggNOG free text desc. endonuclease activity EggNOG OGs KOG4197@1,KOG4197@2759 Ec32 ortholog description Pentatricopeptide repeat Ec32 ortholog Ec-16_005060.1 Cds size 945 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462503.7418983-CDS-Ecto-sp13_S_contig10052:331..460 1681462503.7418983-CDS-Ecto-sp13_S_contig10052:331..460 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10052 332..460 - 1681462503.755369-CDS-Ecto-sp13_S_contig10052:1434..1620 1681462503.755369-CDS-Ecto-sp13_S_contig10052:1434..1620 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10052 1435..1620 - 1681462503.7646794-CDS-Ecto-sp13_S_contig10052:2224..2309 1681462503.7646794-CDS-Ecto-sp13_S_contig10052:2224..2309 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10052 2225..2309 - 1681462503.7817152-CDS-Ecto-sp13_S_contig10052:2982..3201 1681462503.7817152-CDS-Ecto-sp13_S_contig10052:2982..3201 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10052 2983..3201 - 1681462503.801008-CDS-Ecto-sp13_S_contig10052:3771..3915 1681462503.801008-CDS-Ecto-sp13_S_contig10052:3771..3915 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10052 3772..3915 - 1681462503.8109825-CDS-Ecto-sp13_S_contig10052:4145..4327 1681462503.8109825-CDS-Ecto-sp13_S_contig10052:4145..4327 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10052 4146..4327 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10052.76.1
>prot_Ecto-sp13_S_contig10052.76.1 ID=prot_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAI back to top mRNA from alignment at Ecto-sp13_S_contig10052:332..4327-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10052.76.1 ID=mRNA_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10052:332..4327- (Ectocarpus species13 EcNAP12_S_4_19m)GGAGTCGCGGCGGACAATGCGTGCCTAGGACACGTCGCGACAGCTTGTGC
GAGGGCTCAGATGTTTGAAACAGCGTTGGCCATGGTGCGAGGCATGGTCT
CGAAGGGGCACAGCGTTACCCGCACGTACAATAACATCATGCTCGCGATT
GTCAACGGTCAGGCATTCACGTCTCGAACAAG GTAAGTGCCTTAGGTGGT
CTTCGCAACGCTGAGGTATTCCACACATACACGTTTCGAAAGCTCTATCC
TCTCCAGTAACCACGCCTCCGATTAACGCTTCTCAAGCACATCGCATACC
CTTTATTCAAGCAGATCGGGCATCACTGCTCTGTCTGTTCGTTTTTGCAA
GTCTGAGCCCCCCTGTGGCCCAACCCTCCAATATGCGTGCAATGCTACTC
TGTGCTCAGCAGCAGTCGCTCCAATTTTCGGCGCTCCGCCCTGTCTAACA
TGGAGTGCGAGGCGGCAGTGGGGCTTCTCGGAGAGATGCAGGCGTGCGGC
GCTCACCCGACGGTCTTCACGTACAACTTGCTGATCGCCGCACTCACGAG
ATCTAG GTACGCACCGCCTTGACTTGACTTGACATGTGGCCTTGGTGTCA
GCCGTTCTATATACGGTAAGGTGATTACAGCTGCTGCGCCGCACGTCCTC
GGTCTATTTCGACGCGGAGGCGACGGTTCTGGGTAGCGAATATTCAAAGT
ACTTTTTGGCGGGTCGTATGTGATGTGCTGATCACAACGAGCCTCGTAAG
TTGCCGACAATCCTGTCTCCCGCGGGACGTCTATCTGAGACAGTGCAGAG
ATAAAAACCTGCTCTCAAACCTGCGTGGTTTTTCTGAGTGATCAATCCTT
TAACCTTTCTGAACGGTTTGGGCCGATTTCGCGCCACAGCAGTTGGAATG
TCTGGCCTAATAATAGCGGCCACGCACAACTTGTAGCGTCTAGCGTGGCC
CAGACACGAGACCCGGCAAGTGACGGGGCAACACATGCTACAGTATGCTT
CACATCCCGATACGGGAACGGGAAAGGTCAAATCCGCTGCAGGCGACCCT
CCCGTTCGCAACGCCCGCATTCGACAACCAGCATGAAAAAACAATCCGGC
ACTGCACATGAACCACATCACTGCAGGAGACCACACAGCGAAGTCTTGAA
CCTGCTAGACCAAATGCGCTGCGACGGGATCAAGCCGGATAGCTACACGT
ACGTCGGCGTCGTCAAGGGCATCCAGGGCCCCAAAAAGAATGCAATGATG
AGAGCGGTACTGGAGGACGCCAAGTTGGAGCTCCAGGGGTTGGATTTGTC
GGCGGTGTACAGCGCAGTCGTGTCGGGGTATGCCATGGACGGCAG GTGGG
GTTGCGTTCATGCCACGGTATCGGCCAGCCAGCCGGCCGGCCGGCCGGCC
TGGGTGTTTTGTTGGGGATGTGTTGTGTCCGTTTTCGACGTGAAGAACTG
GTGCGTGTTGGTCTTGGTGCTGTAGTTTGGCGTGGGTGTGGTATCCTCGC
GGTGTGTTTGGATTTGGGGTTTTTTATGAGGACGAGGGCGTCGGTGTGTC
GCTTTTACGGCGAGGAGGGGAGGGGGGCGGGGTACCAGCACTGTCGTCTG
TGGATCCGTTGCGGACGGCGGGCGCGCCCTGTGTACTGTGCGCGGGGCGG
GGGGGGGTACTGCGGTGAGCGCAAGCCCGAACTTCATTTACTTGCCGCGG
GTGATCGGATGTATGAACTCATTCGCCAGTGCCTACCTATGCCAAAGAGT
TGCTGTCTGGCACACATTTTGGAGCCCAAGCCTCGAGGCTTTCGCCGTGC
TGGCTGTCCTTTACTCCACACTGACTGCACTAGACGGCTTCCCTTCGACT
TGTCCCTACCTGTGACAAGCTGTGACAAGCTGTGACATGTTGCTAGAGCG
CTCGGGTCCTTTTTCTCGGTTAACACCCGAATCAATCATGATTATGTTTC
TCACAGAGATGTTTGTTGGCGGTGCTGTCTTGCCTTGCACTGCCCTGCCC
TGCCCTGTCCTGCTGCAGTTGGGAAGATGCTTCCGCGCTGGTGGACGAGA
TGTTTGCAAATGACGTGCCGCGAGACGAGTACACGTACTGCGCTGCCATG
AAT GTGAGCTGTCAGTCACGTTAGCTCACGTTAGTCGCACGCCCTGGGGA
CCCTTGCCCTTCCCCACTCTCAATTATGACATGTGATCCCTTTGGATTTC
CCGGCATGGATGTACCTCCTTGCCTTGCATCTCCTTCTCCGTGTCGATTG
GTTCCGTTCCAGCGGCTGACCTCGTTTTCAGTGCGCAATTGGTGCGTGGC
GATGATCAACCAACTAGCCCTCACGGTGTACTGTACTGCATATCCGCCAA
CGTACGTACTCCCTTTCCCTGTTGTTGGAGGAGAATAAGCTGCGACAGGG
GATGGCATTTCAATGGGATTCGACGGCTACACCGTTTGTCCCCTTTTTTT
GTGCGCATTGTTTTACCCTACCCCCGAACTGCCCTCTGTACTTCAGGCAC
GCTCTAGTAATACCGCATCCATCCACCGATACGTCATTTAGTATTCACCC
CTGCTCCAAAGGCGCTCTTAAAGCAGCGGCACAAGACACAAGGAGATTGA
ACGGTGACGGCAACCTTGCGGTGACCTTGTCGACCCTACCTCTCGCATAC
TCCCGTGTGTCCTAACCCGCCTGTGACGTCGCTGCTGCTTTGCGTCCATC
CCGAAAGGCGTGCAAAGAGGCGGGGAAGTGGATGCAGGCGGCGGCGTTCC
TGCCTAGAATGAGGGCAGACGGCGTCCCACCAAACACCATCGCCTACAAC
ACGGCCATCGGGGCGTGCGCGTTCTTTGGAAGGCCGCACAAGGCGTGGAA
CAACAATCGGGAGACGAGCTCCTTCATGCGCCCTACCTCGACG GTGAGAA
TGTCGATTGCGGATGAAGGAGTTTTTATGTTGTGGGTTCGAGACTAGAGG
GTAGAAGCCCTCACACTTTCGAAGCTGTACGCACAACCAGCCCTGCCTGT
GTCTGTCCTCATGTTCCAGCAAACAACAACCTTTCGCCGTTGACACTGCC
GTATCATGGTGGTAGTGTCATGTCCGATGTCGATTTTTTCAGCTCTTCTC
CCTGGAACACGAAGTTATGAAGAATACTGCCAGTACATACCCCAATCACG
TGCTAACCCCGTGTCCCATCTCGTAGTGTGAGGGATGCAATAAGACGCCT
TTGTGTATGGTATGTGCAAACTCATGGCAAAGCATGCACGGTAGCAAAAG
AGTCATTGCATGTTTAACCAGAAGGTATTGACTTGATAGTACTCCGTATG
TATTTTGCCCCGCTCCCAAGACTGGCGTGGATTTGTTGGTTGAATCTTTG
CGCGTTCGTATTACATTCATGGACATCGAACGCGGGAAGGCAACCAACCA
ATCCATGCCAGTCTTGGAGCGGGGCAAAATCAAGCTAACATCCTCTGGTC
TAGTATGCAATGACTCTCAATGGAGGGATTGAATGTGCTCTCGATACCCC
TGACATCCACATCCTTGAGGTGGTCTTCACAGTTGAGGCCTACTACATGA
GTGTACTTCAGTATCATACGGTAGGAACACCCGAAGAAAGCATGCAGTGA
TCGCGAGCGGCGAAAGTGAGAAGAGTTGTCAGAGGGTGGCGTTATCCGCT
GTATCCTCTGTGGGGAAGGGAGGTCGTGAAGACATCCAGTGCAGTACCAA
CAGACCGTGATGATGCCAATGGAAGTAGCACCGATTTTGTGCTGGGGTCG
GATCTTGATGTTGATATATGTACGACATTCGTTTGGCTTTCGAAACCACA
CGACCACCTATGACACTGCAACTCACACAAATGCTCCAACAACGCAACGC
GTGGATCGCCTGCGAAGAGAGAAAATATTGGACGGGGGCTGAGCCCGGTG
CAGGCAGAGGCTAGCGACGCGGGAGACTTTGCATTGGGCTTGATGGAAGA
GATGAAGCGGGAGGGAGTGGAGCCCGACATCATCACGTACGGGTAA back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10052:332..4327-
>mRNA_Ecto-sp13_S_contig10052.76.1 ID=mRNA_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10052:332..4327- (Ectocarpus species13 EcNAP12_S_4_19m) back to top