prot_Ecto-sp13_S_contig10052.76.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10052.76.1
Unique Nameprot_Ecto-sp13_S_contig10052.76.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length315
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 1.050e-174
Identity = 301/315 (95.56%), Postives = 308/315 (97.78%), Query Frame = 0 
Query:    1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSS-RSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 314
            GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSS RS+FRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAAL RSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLEL+GLDLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSF+RPTSTREN GRGLSP QAEASDAGDFALGLMEEMKREGVEPDIITYG
Sbjct:   65 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSRSSFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYG 379
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BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 2.250e-164
Identity = 290/314 (92.36%), Postives = 297/314 (94.59%), Query Frame = 0 
Query:    1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSSRSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 314
            GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSSRSNFRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGP KN +MRAVLEDAKLELQG+DLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSFMRPTST            AEASDAGDFALGLM+EMKREGVEPDIITYG
Sbjct:  147 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMRAVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYG 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI1.050e-17495.56PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE2.250e-16492.36PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 96..131
e-value: 1.9E-6
score: 25.7
coord: 169..201
e-value: 6.4E-5
score: 20.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 93..140
e-value: 8.0E-10
score: 38.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 189..247
e-value: 3.1E-7
score: 30.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 6.96
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 273..308
score: 5.031
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 201..235
score: 10.326
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 166..200
score: 8.385
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..266
score: 5.338
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 94..129
score: 11.148
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 165..276
e-value: 2.4E-19
score: 72.0
coord: 1..164
e-value: 2.9E-17
score: 65.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 169..247
coord: 5..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10052contigEcto-sp13_S_contig10052:332..4327 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10052.76.1mRNA_Ecto-sp13_S_contig10052.76.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10052 332..4327 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10052.76.1 ID=prot_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAI
VNGQAFTSRTSSRSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNL
LIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMM
RAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPR
DEYTYCAAMNACKEAGKWMQAAAFLPRMRADGVPPNTIAYNTAIGACAFF
GRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEE
MKREGVEPDIITYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf