mRNA_Ecto-sp13_S_contig19546.6296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.520e-24 Identity = 65/122 (53.28%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFL-CKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
G YDEA LY R++AIREKALGPDHPDVA L N A L ++QV I + ++P +L+ + V FL +G YDEA LY R++AI EKALGPDHPDVA LNN A +LESQ
Sbjct: 428 GNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLEAQVRAIRIP----GSFLWYPIDSEALN----NRVLFLKAQGNYDEAGKLYERSLAISEKALGPDHPDVAQSLNNWALLLESQ 541
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI) HSP 1 Score: 103 bits (258), Expect = 5.600e-24 Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQV-DCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
GK++EAEPLY R++AI E+ GPDHP+VA+ L NLAGL ++Q+ + +Q+ S + +P++ + + P + +GKY+EAEPL+ R++AI E+ GPDHP+VA+ L+NLA +LESQ
Sbjct: 82 GKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLLETQIMTSVVRQSHSVNSH-----EPSTDVLGLRQPD--VAQGKYEEAEPLHRRSLAIDEEVYGPDHPNVATGLSNLAGLLESQ 196
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 100 bits (250), Expect = 8.150e-22 Identity = 57/121 (47.11%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
GKYDEAEPLY R++AI EK GPDHPDVA+ L N L S Y +L +P + +GKYD+A PLY R++AI EK GPDHPDVA LNN A++L +Q
Sbjct: 352 GKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLSI--------CSSALKYLL------ALTTLLPVVPFLIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRAQ 458
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.120e-20 Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
GK++EAE +Y +++I +K GPDHP++A+ L N AGL SQ A++ SL +P C+GKYD AEPLY+R++AIREK GPDHP+VA+ LNN A+ L Q
Sbjct: 339 GKFEEAETIYRHSMSILKKTHGPDHPEIATGLNNWAGLLSSQ--------HHEANF--------SLAFRVP------CQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLRHQ 437
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.980e-19 Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPI-PSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLES 360
GKY A PLY R AI+E LGP+HP +A+ L N A L QV I +T F A +++ P+ PS + F +GK +EA PL R++AI+E+ LGPDHPDVA+ LNNL +LES
Sbjct: 1902 GKYAAAGPLYARCQAIQETVLGPEHPRLATTLSNWAALLYEQVT-IAPET-------LFSACCSAIGPPMTPSRLPFPFQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLES 2014
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.530e-18 Identity = 58/120 (48.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLES 360
GKY EA PLY R AI+E LGPDHP +A+ L N A L Q D F + L PV F +GK +EA L+ R++AIREKALGPDHPDVA+ LNNL+ +LES
Sbjct: 22 GKYTEAGPLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQ------------DVPTFAMTSSRL------PVTF--QGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 3.550e-18 Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
GK+ EAE LY R+++I EK GPDHP+VA+ L N+A L +SQ G S D + S GK EA PL+ +++ IREK LGP+HPDVA LNNLA VL SQ
Sbjct: 7 GKFHEAESLYKRSLSIDEKVYGPDHPEVAADLNNMAVLMESQARRWG-----------------SSDKFLGS-----TSGKCVEAVPLHRQSLGIREKTLGPEHPDVAESLNNLAGVLRSQ 105
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 7.970e-16 Identity = 55/137 (40.15%), Postives = 73/137 (53.28%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQ----------------VDCIGQQT-DSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLES 360
G + EA+P +RAI I EK LGP+HPD+A L N A L ++Q V+ GQ + C P T+L +P F +GK+ EAEPLY RA I E ALGP+HP +A+ LNN A +L +
Sbjct: 644 GNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLRAQLLNNPRTGLLKAQGGVVESAGQGVVEQLFARCQSPLALTTLLTYLP----FTSQGKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLSN 776
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.490e-15 Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 40 IAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
+AIREK LGP+HPDVA+ L N AGL + I + F K S P H + +GKY EAEPLY R A++ KALGP+HP +A+ LNN A++L +Q
Sbjct: 135 MAIREKVLGPEHPDVAASLNNRAGLLRKCFSTI--------PFTIFTLKHDSSRYP-----HCI-QGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5K2T5_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 5.450e-14 Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
GKY EA+PL++RAI IRE+ L PDH D+A L N A L +Q F K PI +GKY EA+PL +RA+ I + LGPDHPD+A L N A +L Q
Sbjct: 495 GKYAEADPLFLRAIDIRERTLDPDHHDLAVWLGNRAVLLANQS--------------FLAWKTVLKRFPI------TLQGKYAEADPLILRAMDIGKSPLGPDHPDLALWLGNRACLLGQQ 595 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19546.6296.1 >prot_Ecto-sp13_S_contig19546.6296.1 ID=prot_Ecto-sp13_S_contig19546.6296.1|Name=mRNA_Ecto-sp13_S_contig19546.6296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTback to top mRNA from alignment at Ecto-sp13_S_contig19546:517..1883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19546.6296.1 ID=mRNA_Ecto-sp13_S_contig19546.6296.1|Name=mRNA_Ecto-sp13_S_contig19546.6296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19546:517..1883- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19546:517..1883- >mRNA_Ecto-sp13_S_contig19546.6296.1 ID=mRNA_Ecto-sp13_S_contig19546.6296.1|Name=mRNA_Ecto-sp13_S_contig19546.6296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19546:517..1883- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |