mRNA_Ecto-sp13_S_contig19546.6296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19546.6296.1
Unique NamemRNA_Ecto-sp13_S_contig19546.6296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.520e-24
Identity = 65/122 (53.28%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFL-CKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            G YDEA  LY R++AIREKALGPDHPDVA  L N A L ++QV  I         + ++P    +L+    + V FL  +G YDEA  LY R++AI EKALGPDHPDVA  LNN A +LESQ
Sbjct:  428 GNYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWALLLEAQVRAIRIP----GSFLWYPIDSEALN----NRVLFLKAQGNYDEAGKLYERSLAISEKALGPDHPDVAQSLNNWALLLESQ 541          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.600e-24
Identity = 57/122 (46.72%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQV-DCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            GK++EAEPLY R++AI E+  GPDHP+VA+ L NLAGL ++Q+   + +Q+ S   +     +P++  + +  P   + +GKY+EAEPL+ R++AI E+  GPDHP+VA+ L+NLA +LESQ
Sbjct:   82 GKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLLETQIMTSVVRQSHSVNSH-----EPSTDVLGLRQPD--VAQGKYEEAEPLHRRSLAIDEEVYGPDHPNVATGLSNLAGLLESQ 196          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.150e-22
Identity = 57/121 (47.11%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            GKYDEAEPLY R++AI EK  GPDHPDVA+ L N   L             S   Y        +L   +P     + +GKYD+A PLY R++AI EK  GPDHPDVA  LNN A++L +Q
Sbjct:  352 GKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLSI--------CSSALKYLL------ALTTLLPVVPFLIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRAQ 458          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.120e-20
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            GK++EAE +Y  +++I +K  GPDHP++A+ L N AGL  SQ           A++        SL   +P      C+GKYD AEPLY+R++AIREK  GPDHP+VA+ LNN A+ L  Q
Sbjct:  339 GKFEEAETIYRHSMSILKKTHGPDHPEIATGLNNWAGLLSSQ--------HHEANF--------SLAFRVP------CQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLRHQ 437          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.980e-19
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPI-PSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLES 360
            GKY  A PLY R  AI+E  LGP+HP +A+ L N A L   QV  I  +T        F A  +++  P+ PS + F  +GK +EA PL  R++AI+E+ LGPDHPDVA+ LNNL  +LES
Sbjct: 1902 GKYAAAGPLYARCQAIQETVLGPEHPRLATTLSNWAALLYEQVT-IAPET-------LFSACCSAIGPPMTPSRLPFPFQGKLEEAGPLVKRSLAIKERVLGPDHPDVATSLNNLGCLLES 2014          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.530e-18
Identity = 58/120 (48.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLES 360
            GKY EA PLY R  AI+E  LGPDHP +A+ L N A L   Q            D   F    + L      PV F  +GK +EA  L+ R++AIREKALGPDHPDVA+ LNNL+ +LES
Sbjct:   22 GKYTEAGPLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQ------------DVPTFAMTSSRL------PVTF--QGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.550e-18
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            GK+ EAE LY R+++I EK  GPDHP+VA+ L N+A L +SQ    G                 S D  + S       GK  EA PL+ +++ IREK LGP+HPDVA  LNNLA VL SQ
Sbjct:    7 GKFHEAESLYKRSLSIDEKVYGPDHPEVAADLNNMAVLMESQARRWG-----------------SSDKFLGS-----TSGKCVEAVPLHRQSLGIREKTLGPEHPDVAESLNNLAGVLRSQ 105          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.970e-16
Identity = 55/137 (40.15%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQ----------------VDCIGQQT-DSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLES 360
            G + EA+P  +RAI I EK LGP+HPD+A  L N A L ++Q                V+  GQ   +     C  P   T+L   +P    F  +GK+ EAEPLY RA  I E ALGP+HP +A+ LNN A +L +
Sbjct:  644 GNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLRAQLLNNPRTGLLKAQGGVVESAGQGVVEQLFARCQSPLALTTLLTYLP----FTSQGKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLSN 776          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.490e-15
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   40 IAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            +AIREK LGP+HPDVA+ L N AGL +     I         +  F  K  S   P     H + +GKY EAEPLY R  A++ KALGP+HP +A+ LNN A++L +Q
Sbjct:  135 MAIREKVLGPEHPDVAASLNNRAGLLRKCFSTI--------PFTIFTLKHDSSRYP-----HCI-QGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228          
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Match: A0A6H5K2T5_9PHAE (PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.450e-14
Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    1 GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQTDSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKALGPDHPDVASCLNNLADVLESQ 363
            GKY EA+PL++RAI IRE+ L PDH D+A  L N A L  +Q               F   K      PI        +GKY EA+PL +RA+ I +  LGPDHPD+A  L N A +L  Q
Sbjct:  495 GKYAEADPLFLRAIDIRERTLDPDHHDLAVWLGNRAVLLANQS--------------FLAWKTVLKRFPI------TLQGKYAEADPLILRAMDIGKSPLGPDHPDLALWLGNRACLLGQQ 595          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19546.6296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4D0_9PHAE1.520e-2453.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G180_ECTSI5.600e-2446.72TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KIY6_9PHAE8.150e-2247.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9V8_9PHAE1.120e-2044.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN5_9PHAE1.980e-1947.11CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JPL8_9PHAE2.530e-1848.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LI51_9PHAE3.550e-1845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE7.970e-1640.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC1_9PHAE2.490e-1545.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2T5_9PHAE5.450e-1442.15PK_Tyr_Ser-Thr domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19546contigEcto-sp13_S_contig19546:517..1883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.6
Seed ortholog evalue8.7e-20
Seed eggNOG ortholog2880.D7G180
Model size480
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size480
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.4874158-CDS-Ecto-sp13_S_contig19546:516..6331681462990.4874158-CDS-Ecto-sp13_S_contig19546:516..633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19546 517..633 -
1681462990.4963033-CDS-Ecto-sp13_S_contig19546:1132..13691681462990.4963033-CDS-Ecto-sp13_S_contig19546:1132..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19546 1133..1369 -
1681462990.5066748-CDS-Ecto-sp13_S_contig19546:1757..18831681462990.5066748-CDS-Ecto-sp13_S_contig19546:1757..1883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19546 1758..1883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19546.6296.1prot_Ecto-sp13_S_contig19546.6296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19546 517..1883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19546.6296.1

>prot_Ecto-sp13_S_contig19546.6296.1 ID=prot_Ecto-sp13_S_contig19546.6296.1|Name=mRNA_Ecto-sp13_S_contig19546.6296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
GKYDEAEPLYIRAIAIREKALGPDHPDVASCLKNLAGLRQSQVDCIGQQT
DSGADYCFFPAKPTSLDVPIPSPVHFLCKGKYDEAEPLYIRAIAIREKAL
GPDHPDVASCLNNLADVLESQGKYDEAEPLYIRAIAIREKALGPDHPDVA
GFLNNQAHLL
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mRNA from alignment at Ecto-sp13_S_contig19546:517..1883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19546.6296.1 ID=mRNA_Ecto-sp13_S_contig19546.6296.1|Name=mRNA_Ecto-sp13_S_contig19546.6296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19546:517..1883- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGATCAG AGAGAAGGCGCTGGGTCCAGATCATCCAGACGTTGCCAGCTGTCTCAAAA ACCTGGCGGGCTTACGGCAGAGTCAGGTGAGAGTCGAATAATGTGTGGGA ATGGGCAACAAGCGTGTATATATCTCGGTGTGAAGTATGTGTGTTGTGGA CCACTGACGTTCACCCTCCCTCACATCTTGTATCGCAAGGACAGTGTGGG GCGGTCGGGTCACTGTATGGGCGGTCGCACGGTGTACTCGAGAAGGTGCT GAGTCCGGAAAAACCCGATGTGACCCAGTCGCTCAACGACCAAGGCGTGG TTGTTGATTATTTGTTCTTCCGCACTATACGCTTAACGGACGCGTGGTGA CACCCTCTTCCTCTTCCCTCCCCGTCCAGAGCAAGGTACCCAGAGATGGA ACCACTCCAGTGTGTGTACGGTGTGAGGCAACTCAGGGGAAGGTTCGGCC GTGAGTTTCCCAAGGTTGACTGCATTGGTCAACAAACGGACAGTGGTGCT GACTACTGCTTCTTCCCAGCGAAGCCTACTAGCCTTGACGTTCCTATCCC GTCTCCCGTTCATTTTCTATGTAAGGGCAAGTACGACGAGGCGGAGCCGT TGTACATTCGAGCAATCGCGATCAGAGAGAAGGCGCTGGGTCCAGATCAT CCAGACGTTGCCAGCTGTCTTAATAACCTGGCGGACGTACTGGAGAGTCA GGTGAGAGTCGAATAATGTGTGGGAATGGGCAACAAGCGTGTATATATCT CGGTGTGAAGTATGTGTGTTGTGCACCACTGACGTTCACCCTCCCTCACA TCTTGTATCGCAAGGACAGTGTGGGGCGGTCGGGTCACTGTATGGGCGGT CGCACGGTGTACTCGAGAAGGTGCTGAGTCCGGAAAAACCCGACGTGACT CAGTCGCTCAACGACCAAGGCGTGGTTGCTGAATATTTGTTCCTCCGCAC TTTACGCTTCACGGACACGTGGTGACACCCTCTTCCTCTTCCCTCCCCGT CCAGAGCAAGGTACCCAGAAACGGAACCACTCCGGTGTGTGTACGGTGTG AGGCGACTCAGGGGAAAGTTCGGCCGTGAGTTTCCCAAGGTTGACTGCAT TGGTCAACAAACGGACAGTGGTGTTGACTACTGCTTCTTCCCAGCGAAGC CTACTAGCCTTGACGTTCCTATCCCGTCTCCCGTTCATTTTCTATGTAAG GGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGATCAG AGAGAAGGCGCTGGGTCCGGATCATCCAGACGTTGCCGGCTTTCTCAACA ACCAGGCACATTTGTTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19546:517..1883-

>mRNA_Ecto-sp13_S_contig19546.6296.1 ID=mRNA_Ecto-sp13_S_contig19546.6296.1|Name=mRNA_Ecto-sp13_S_contig19546.6296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19546:517..1883- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAGCAATCGCGATCAG
AGAGAAGGCGCTGGGTCCAGATCATCCAGACGTTGCCAGCTGTCTCAAAA
ACCTGGCGGGCTTACGGCAGAGTCAGGTTGACTGCATTGGTCAACAAACG
GACAGTGGTGCTGACTACTGCTTCTTCCCAGCGAAGCCTACTAGCCTTGA
CGTTCCTATCCCGTCTCCCGTTCATTTTCTATGTAAGGGCAAGTACGACG
AGGCGGAGCCGTTGTACATTCGAGCAATCGCGATCAGAGAGAAGGCGCTG
GGTCCAGATCATCCAGACGTTGCCAGCTGTCTTAATAACCTGGCGGACGT
ACTGGAGAGTCAGGGCAAGTACGACGAGGCGGAGCCGTTGTACATTCGAG
CAATCGCGATCAGAGAGAAGGCGCTGGGTCCGGATCATCCAGACGTTGCC
GGCTTTCTCAACAACCAGGCACATTTGTTA
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