mRNA_Ecto-sp13_S_contig19069.6069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.650e-58 Identity = 98/103 (95.15%), Postives = 99/103 (96.12%), Query Frame = 3
Query: 3 VMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 311
VMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQS+DAASHDLTKE GDE AGSDDEG GGGKVVAFEVTDLDVFRQLVLNRLT
Sbjct: 958 VMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSLDAASHDLTKELGDE-AGSDDEGGVGGGKVVAFEVTDLDVFRQLVLNRLT 1059
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE) HSP 1 Score: 174 bits (440), Expect = 2.810e-48 Identity = 87/103 (84.47%), Postives = 88/103 (85.44%), Query Frame = 3
Query: 3 VMMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 311
VMMLDCDRCHRWFHG CVGITSQEDCPEEWFCVDCTILRQV+AQK AHA RQS EFGDE AGSDDEGAGGGGK VAFEVTDLDVFRQLVLNRLT
Sbjct: 964 VMMLDCDRCHRWFHGRCVGITSQEDCPEEWFCVDCTILRQVTAQKRAHANRQST---------EFGDE-AGSDDEGAGGGGKTVAFEVTDLDVFRQLVLNRLT 1056
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S3VWS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWS1_EMIHU) HSP 1 Score: 71.2 bits (173), Expect = 2.910e-12 Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQED-CPEEWFCVDCTILRQVSAQKHAHAKRQSM 164
MLDCDRCHRWFHG CVGI +QED P EWFC C + R V+ Q+ ++ S+
Sbjct: 168 MLDCDRCHRWFHGSCVGIEAQEDDLPSEWFCESCQLSRAVTKQRTTISRLLSL 220
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.070e-11 Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHA-------HAKRQ-------SMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 311
MLDCDRCH WFHG CVG+T ++ P+ W C +CT+ V Q A H KR+ S H K+ D A +D G EV D +FRQL+LN +T
Sbjct: 507 MLDCDRCHAWFHGSCVGVT-KDSLPDVWICDECTLQVMVLEQTQAFVERCSNHQKRRVKGTEEDSQKQKRHKKAKQKKDIAQANDVAGDQTEASDNVPEVDDTHIFRQLLLNYMT 620
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S1CNW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNW5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.270e-11 Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSA-QKHAHAKRQSMDAA 173
MLDCD CHRWFHG CVGI +E PE W+C DC +L QV Q H R++ AA
Sbjct: 55 MLDCDTCHRWFHGDCVGIR-EEYAPEAWYCDDCVLLHQVKVVQAHIETVRKTAAAA 109
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S4B8G5_CHRCT (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8G5_CHRCT) HSP 1 Score: 68.6 bits (166), Expect = 2.730e-11 Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGI--TSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRL 308
MLDCD+CHRWFHG CVGI TS+ PEEWFC C + V+ Q+ + ++ + GD G D+ ++ ++ +V +QL++N L
Sbjct: 722 MLDCDKCHRWFHGACVGIYPTSEHSVPEEWFCDSCQLSTAVAEQRQRITRLLAL--------RGDGDSNGGDDENSK----EIYEMLTSETEVTKQLLINHL 811
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: B8BTF2_THAPS (Sister chromatid cohesion protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF2_THAPS) HSP 1 Score: 65.9 bits (159), Expect = 2.420e-10 Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKH--AHAKRQSMDAASHDLT 188
M+DCDRCH WFHG C+GIT ++ P+EWFC +CT+ + Q + A+ R+S S D T
Sbjct: 864 MVDCDRCHSWFHGSCIGIT-KDTVPDEWFCDECTMQTTIMKQANVFANTNRESNKLTSKDHT 924
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S2UG10_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG10_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 6.120e-10 Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 311
MLDCDRCH WFHG C GI ++ PE W C +CT+ V Q A A R S S K+ G ++ + +V + +FRQL+LN LT
Sbjct: 585 MLDCDRCHNWFHGSCAGIC-KDSLPEVWICNECTMQIMVLEQTKAFATRCSHRRRS---AKKSGKSSSAKN---------CPTPQVDETHIFRQLLLNHLT 672
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S3QDB7_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDB7_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 5.390e-9 Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQ------KHAHAKRQSMDAA--SHDLTKE 194
MLDCDRCH WFHG C+G ++++ PE+W C +CT+ V Q K+ +R + D A S +LTKE
Sbjct: 204 MLDCDRCHNWFHGSCIGF-AKDNLPEKWICDECTMQLLVHDQMKIFSTKYGQRQRNTKDDAPNSLELTKE 272
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: K0SHJ0_THAOC (Sister chromatid cohesion protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHJ0_THAOC) HSP 1 Score: 61.6 bits (148), Expect = 7.430e-9 Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 3
Query: 9 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDA 170
MLDCDRCH WFHG CVGIT ++ PE W C DCT+ Q S A A Q D+
Sbjct: 720 MLDCDRCHSWFHGSCVGIT-KDAVPETWVCDDCTL--QGSMLDQAKAFTQGKDS 770 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19069.6069.1 >prot_Ecto-sp13_S_contig19069.6069.1 ID=prot_Ecto-sp13_S_contig19069.6069.1|Name=mRNA_Ecto-sp13_S_contig19069.6069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp MMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRback to top mRNA from alignment at Ecto-sp13_S_contig19069:127..3224+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19069.6069.1 ID=mRNA_Ecto-sp13_S_contig19069.6069.1|Name=mRNA_Ecto-sp13_S_contig19069.6069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19069:127..3224+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19069:127..3224+ >mRNA_Ecto-sp13_S_contig19069.6069.1 ID=mRNA_Ecto-sp13_S_contig19069.6069.1|Name=mRNA_Ecto-sp13_S_contig19069.6069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19069:127..3224+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |