prot_Ecto-sp13_S_contig19069.6069.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19069.6069.1
Unique Nameprot_Ecto-sp13_S_contig19069.6069.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length102
Homology
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 5.480e-58
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0
Query:    1 MMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 102
            MMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQS+DAASHDLTKE GDE AGSDDEG  GGGKVVAFEVTDLDVFRQLVLNRLT
Sbjct:  959 MMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSLDAASHDLTKELGDE-AGSDDEGGVGGGKVVAFEVTDLDVFRQLVLNRLT 1059          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 9.350e-48
Identity = 86/102 (84.31%), Postives = 87/102 (85.29%), Query Frame = 0
Query:    1 MMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 102
            MMLDCDRCHRWFHG CVGITSQEDCPEEWFCVDCTILRQV+AQK AHA RQS          EFGDE AGSDDEGAGGGGK VAFEVTDLDVFRQLVLNRLT
Sbjct:  965 MMLDCDRCHRWFHGRCVGITSQEDCPEEWFCVDCTILRQVTAQKRAHANRQST---------EFGDE-AGSDDEGAGGGGKTVAFEVTDLDVFRQLVLNRLT 1056          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S3VWS1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VWS1_EMIHU)

HSP 1 Score: 71.2 bits (173), Expect = 2.800e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQED-CPEEWFCVDCTILRQVSAQKHAHAKRQSM 53
            MLDCDRCHRWFHG CVGI +QED  P EWFC  C + R V+ Q+   ++  S+
Sbjct:  168 MLDCDRCHRWFHGSCVGIEAQEDDLPSEWFCESCQLSRAVTKQRTTISRLLSL 220          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.030e-11
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHA-------HAKRQ-------SMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 102
            MLDCDRCH WFHG CVG+T ++  P+ W C +CT+   V  Q  A       H KR+       S     H   K+  D A  +D  G          EV D  +FRQL+LN +T
Sbjct:  507 MLDCDRCHAWFHGSCVGVT-KDSLPDVWICDECTLQVMVLEQTQAFVERCSNHQKRRVKGTEEDSQKQKRHKKAKQKKDIAQANDVAGDQTEASDNVPEVDDTHIFRQLLLNYMT 620          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S1CNW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNW5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.230e-11
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSA-QKHAHAKRQSMDAA 56
            MLDCD CHRWFHG CVGI  +E  PE W+C DC +L QV   Q H    R++  AA
Sbjct:   55 MLDCDTCHRWFHGDCVGIR-EEYAPEAWYCDDCVLLHQVKVVQAHIETVRKTAAAA 109          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S4B8G5_CHRCT (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8G5_CHRCT)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-11
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGI--TSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRL 101
            MLDCD+CHRWFHG CVGI  TS+   PEEWFC  C +   V+ Q+    +  ++        +  GD   G D+       ++     ++ +V +QL++N L
Sbjct:  722 MLDCDKCHRWFHGACVGIYPTSEHSVPEEWFCDSCQLSTAVAEQRQRITRLLAL--------RGDGDSNGGDDENSK----EIYEMLTSETEVTKQLLINHL 811          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: B8BTF2_THAPS (Sister chromatid cohesion protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF2_THAPS)

HSP 1 Score: 65.9 bits (159), Expect = 2.340e-10
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKH--AHAKRQSMDAASHDLT 61
            M+DCDRCH WFHG C+GIT ++  P+EWFC +CT+   +  Q +  A+  R+S    S D T
Sbjct:  864 MVDCDRCHSWFHGSCIGIT-KDTVPDEWFCDECTMQTTIMKQANVFANTNRESNKLTSKDHT 924          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S2UG10_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG10_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.890e-10
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNRLT 102
            MLDCDRCH WFHG C GI  ++  PE W C +CT+   V  Q  A A R S    S    K+ G  ++  +             +V +  +FRQL+LN LT
Sbjct:  585 MLDCDRCHNWFHGSCAGIC-KDSLPEVWICNECTMQIMVLEQTKAFATRCSHRRRS---AKKSGKSSSAKN---------CPTPQVDETHIFRQLLLNHLT 672          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: A0A7S3QDB7_9STRA (Sister chromatid cohesion protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDB7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.190e-9
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQ------KHAHAKRQSMDAA--SHDLTKE 63
            MLDCDRCH WFHG C+G  ++++ PE+W C +CT+   V  Q      K+   +R + D A  S +LTKE
Sbjct:  204 MLDCDRCHNWFHGSCIGF-AKDNLPEKWICDECTMQLLVHDQMKIFSTKYGQRQRNTKDDAPNSLELTKE 272          
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Match: K0SHJ0_THAOC (Sister chromatid cohesion protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHJ0_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 7.170e-9
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0
Query:    2 MLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKRQSMDA 55
            MLDCDRCH WFHG CVGIT ++  PE W C DCT+  Q S    A A  Q  D+
Sbjct:  720 MLDCDRCHSWFHGSCVGIT-KDAVPETWVCDDCTL--QGSMLDQAKAFTQGKDS 770          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19069.6069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FSV8_ECTSI5.480e-5895.10Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE9.350e-4884.31PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3VWS1_EMIHU2.800e-1256.60Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S4RR27_9STRA1.030e-1138.26Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
A0A7S1CNW5_9STRA1.230e-1155.36Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4B8G5_CHRCT2.630e-1135.29Sister chromatid cohesion protein (Fragment) n=1 T... [more]
B8BTF2_THAPS2.340e-1046.77Sister chromatid cohesion protein n=1 Tax=Thalassi... [more]
A0A7S2UG10_9STRA5.890e-1038.61Sister chromatid cohesion protein (Fragment) n=1 T... [more]
A0A7S3QDB7_9STRA5.190e-944.29Sister chromatid cohesion protein (Fragment) n=1 T... [more]
K0SHJ0_THAOC7.170e-955.56Sister chromatid cohesion protein n=1 Tax=Thalassi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.650coord: 1..94
e-value: 1.7E-12
score: 49.1
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 2..35
e-value: 7.0E-8
score: 32.2
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 2..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19069contigEcto-sp13_S_contig19069:132..3224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19069.6069.1mRNA_Ecto-sp13_S_contig19069.6069.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19069 127..3224 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19069.6069.1 ID=prot_Ecto-sp13_S_contig19069.6069.1|Name=mRNA_Ecto-sp13_S_contig19069.6069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MMLDCDRCHRWFHGHCVGITSQEDCPEEWFCVDCTILRQVSAQKHAHAKR
QSMDAASHDLTKEFGDEAAGSDDEGAGGGGKVVAFEVTDLDVFRQLVLNR
LT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD