mRNA_Ecto-sp13_S_contig18397.5717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A6H5JZR4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR4_9PHAE) HSP 1 Score: 159 bits (401), Expect = 3.930e-46 Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QECAVLL+HGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY
Sbjct: 268 QECAVLLIHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 343
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A6S9LH47_HETAK (E3 ubiquitin-protein ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LH47_HETAK) HSP 1 Score: 104 bits (259), Expect = 1.660e-27 Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC VLL+HGRRAAYFPSPYVDAYGER + FRGRPLYLD RR VV LW H V EV Q R T RQVII +Y
Sbjct: 25 QECQVLLLHGRRAAYFPSPYVDAYGERHKQ-FRGRPLYLDARRLAVVAALWRAHGVPREVAQRRGTHRQVIITGYY 99
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S2H0X4_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0X4_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 7.490e-21 Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC+VLL+HG RA YF SPYVDA+GER FRGRPL+LD R +V+R L H V +VV +RSTSRQVIIN +Y
Sbjct: 227 QECSVLLIHGPRACYFASPYVDAHGERHAQ-FRGRPLFLDPNRLEVLRLLAASHEVPAKVVHSRSTSRQVIINSYY 301
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: K8YUN0_NANGC (E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUN0_NANGC) HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20 Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
Q+C+VLL++ RA YFPSPYVD YGER + FRGRPL+LD+RR + +R +W K V +EVVQ RSTS+ VI+ ++Y
Sbjct: 764 QDCSVLLIYLDRACYFPSPYVDVYGERHKQ-FRGRPLHLDERRLEALRRVWAKQRVPYEVVQARSTSKHVILTNYY 838
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A835YQN3_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN3_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 7.400e-20 Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC VLL G+RAAYF SPYVDAYGER R RGRPL++D+RRY V+R L+ +H VA EV + RS+ R+V+ +Y
Sbjct: 1694 QECTVLLTRGKRAAYFASPYVDAYGERHRQP-RGRPLFMDERRYSVLRDLYARHAVAAEVARIRSSGREVLHAGYY 1768
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S4S2Y1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S2Y1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.440e-19 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC L+MHG +AAY SPYVD++GE + +RGRPL LD RYD+++ LW HLV +V+ R +SRQVII + Y
Sbjct: 33 QECIGLIMHGTKAAYVHSPYVDSHGETPQ--YRGRPLNLDLDRYDILQELWSGHLVRQKVIAERGSSRQVIIANFY 106
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S3HU19_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU19_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.280e-18 Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC VL HG R+ YF SPYVD YGE Q H +RG+PLYLD RRY+ + ++ H + EVV RS + ++IIN++Y
Sbjct: 2084 QECQVLFTHGPRSLYFASPYVDVYGESQ-HQYRGKPLYLDPRRYEALTRIYNTHQIPREVVSKRSNATRIIINNYY 2158
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S2SNG9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNG9_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.510e-18 Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC+VL +HG R+ YF SPYVDA+GER H FRGRPLY D R +V+R + +H + +VV RS SRQVII ++Y
Sbjct: 470 QECSVLFVHGPRSCYFASPYVDAHGERHGH-FRGRPLYTDPLRINVLRDIVARHEIPIKVVHTRSISRQVIIPEYY 544
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S1V6W7_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6W7_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 9.810e-18 Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC L+ HG +AAY SPYVD++GE + +RGRPL LD RY++ +W H V +V+Q RS+SRQVII D +
Sbjct: 29 QECQGLIFHGDKAAYVQSPYVDSHGETPQ--YRGRPLNLDMDRYNIFHEMWAGHTVRQKVMQERSSSRQVIIADFF 102
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S4MYL2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYL2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.720e-17 Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
QEC L+MHG +AAY SPYVD++GE + +RGRPL LD RYDV+R +W HLV V+ R++SRQVII + Y
Sbjct: 916 QECVSLIMHGVKAAYIHSPYVDSHGETPQ--YRGRPLNLDLDRYDVLREMWSGHLVRERVISERASSRQVIIANFY 989 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18397.5717.1 >prot_Ecto-sp13_S_contig18397.5717.1 ID=prot_Ecto-sp13_S_contig18397.5717.1|Name=mRNA_Ecto-sp13_S_contig18397.5717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp MHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAback to top mRNA from alignment at Ecto-sp13_S_contig18397:493..1644+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18397.5717.1 ID=mRNA_Ecto-sp13_S_contig18397.5717.1|Name=mRNA_Ecto-sp13_S_contig18397.5717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18397:493..1644+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18397:493..1644+ >mRNA_Ecto-sp13_S_contig18397.5717.1 ID=mRNA_Ecto-sp13_S_contig18397.5717.1|Name=mRNA_Ecto-sp13_S_contig18397.5717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18397:493..1644+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |