mRNA_Ecto-sp13_S_contig18397.5717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18397.5717.1
Unique NamemRNA_Ecto-sp13_S_contig18397.5717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A6H5JZR4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR4_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.930e-46
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QECAVLL+HGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY
Sbjct:  268 QECAVLLIHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 343          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A6S9LH47_HETAK (E3 ubiquitin-protein ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LH47_HETAK)

HSP 1 Score: 104 bits (259), Expect = 1.660e-27
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC VLL+HGRRAAYFPSPYVDAYGER +  FRGRPLYLD RR  VV  LW  H V  EV Q R T RQVII  +Y
Sbjct:   25 QECQVLLLHGRRAAYFPSPYVDAYGERHKQ-FRGRPLYLDARRLAVVAALWRAHGVPREVAQRRGTHRQVIITGYY 99          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S2H0X4_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0X4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.490e-21
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC+VLL+HG RA YF SPYVDA+GER    FRGRPL+LD  R +V+R L   H V  +VV +RSTSRQVIIN +Y
Sbjct:  227 QECSVLLIHGPRACYFASPYVDAHGERHAQ-FRGRPLFLDPNRLEVLRLLAASHEVPAKVVHSRSTSRQVIINSYY 301          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: K8YUN0_NANGC (E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUN0_NANGC)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            Q+C+VLL++  RA YFPSPYVD YGER +  FRGRPL+LD+RR + +R +W K  V +EVVQ RSTS+ VI+ ++Y
Sbjct:  764 QDCSVLLIYLDRACYFPSPYVDVYGERHKQ-FRGRPLHLDERRLEALRRVWAKQRVPYEVVQARSTSKHVILTNYY 838          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A835YQN3_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.400e-20
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC VLL  G+RAAYF SPYVDAYGER R   RGRPL++D+RRY V+R L+ +H VA EV + RS+ R+V+   +Y
Sbjct: 1694 QECTVLLTRGKRAAYFASPYVDAYGERHRQP-RGRPLFMDERRYSVLRDLYARHAVAAEVARIRSSGREVLHAGYY 1768          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S4S2Y1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S2Y1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 9.440e-19
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC  L+MHG +AAY  SPYVD++GE  +  +RGRPL LD  RYD+++ LW  HLV  +V+  R +SRQVII + Y
Sbjct:   33 QECIGLIMHGTKAAYVHSPYVDSHGETPQ--YRGRPLNLDLDRYDILQELWSGHLVRQKVIAERGSSRQVIIANFY 106          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S3HU19_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU19_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.280e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC VL  HG R+ YF SPYVD YGE Q H +RG+PLYLD RRY+ +  ++  H +  EVV  RS + ++IIN++Y
Sbjct: 2084 QECQVLFTHGPRSLYFASPYVDVYGESQ-HQYRGKPLYLDPRRYEALTRIYNTHQIPREVVSKRSNATRIIINNYY 2158          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S2SNG9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNG9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.510e-18
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC+VL +HG R+ YF SPYVDA+GER  H FRGRPLY D  R +V+R +  +H +  +VV  RS SRQVII ++Y
Sbjct:  470 QECSVLFVHGPRSCYFASPYVDAHGERHGH-FRGRPLYTDPLRINVLRDIVARHEIPIKVVHTRSISRQVIIPEYY 544          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S1V6W7_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6W7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.810e-18
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC  L+ HG +AAY  SPYVD++GE  +  +RGRPL LD  RY++   +W  H V  +V+Q RS+SRQVII D +
Sbjct:   29 QECQGLIFHGDKAAYVQSPYVDSHGETPQ--YRGRPLNLDMDRYNIFHEMWAGHTVRQKVMQERSSSRQVIIADFF 102          
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Match: A0A7S4MYL2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYL2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.720e-17
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 QECAVLLMHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVAHEVVQNRSTSRQVIINDHY 228
            QEC  L+MHG +AAY  SPYVD++GE  +  +RGRPL LD  RYDV+R +W  HLV   V+  R++SRQVII + Y
Sbjct:  916 QECVSLIMHGVKAAYIHSPYVDSHGETPQ--YRGRPLNLDLDRYDVLREMWSGHLVRERVISERASSRQVIIANFY 989          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18397.5717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZR4_9PHAE3.930e-4698.68E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A6S9LH47_HETAK1.660e-2769.74E3 ubiquitin-protein ligase n=1 Tax=Heterosigma ak... [more]
A0A7S2H0X4_9STRA7.490e-2163.16E3 ubiquitin-protein ligase n=1 Tax=Dictyocha spec... [more]
K8YUN0_NANGC2.100e-2057.89E3 ubiquitin-protein ligase n=2 Tax=Nannochloropsi... [more]
A0A835YQN3_9STRA7.400e-2059.21E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
A0A7S4S2Y1_9STRA9.440e-1953.95E3 ubiquitin-protein ligase n=1 Tax=Ditylum bright... [more]
A0A7S3HU19_9STRA2.280e-1852.63E3 ubiquitin-protein ligase n=1 Tax=Spumella elong... [more]
A0A7S2SNG9_9STRA5.510e-1856.58E3 ubiquitin-protein ligase n=1 Tax=Rhizochromulin... [more]
A0A7S1V6W7_9STRA9.810e-1851.32E3 ubiquitin-protein ligase n=1 Tax=Grammatophora ... [more]
A0A7S4MYL2_9STRA2.720e-1755.26E3 ubiquitin-protein ligase n=1 Tax=Odontella auri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18397contigEcto-sp13_S_contig18397:493..1644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score70.9
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog159749.K0REY2
Model size231
KEGG koko:K10626,ko:K11978
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Ring finger
EggNOG OGs2XE00@2836,KOG1140@1,KOG1140@2759
EC2.3.2.27
Cds size210
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.5694444-UTR-Ecto-sp13_S_contig18397:492..5131681462945.5694444-UTR-Ecto-sp13_S_contig18397:492..513Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18397 493..513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.5903523-CDS-Ecto-sp13_S_contig18397:513..6691681462945.5903523-CDS-Ecto-sp13_S_contig18397:513..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18397 514..669 +
1681462945.6036615-CDS-Ecto-sp13_S_contig18397:1590..16441681462945.6036615-CDS-Ecto-sp13_S_contig18397:1590..1644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18397 1591..1644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18397.5717.1prot_Ecto-sp13_S_contig18397.5717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18397 514..1644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18397.5717.1

>prot_Ecto-sp13_S_contig18397.5717.1 ID=prot_Ecto-sp13_S_contig18397.5717.1|Name=mRNA_Ecto-sp13_S_contig18397.5717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MHGRRAAYFPSPYVDAYGERQRHSFRGRPLYLDQRRYDVVRGLWVKHLVA
HEVVQNRSTSRQVIINDHY*
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mRNA from alignment at Ecto-sp13_S_contig18397:493..1644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18397.5717.1 ID=mRNA_Ecto-sp13_S_contig18397.5717.1|Name=mRNA_Ecto-sp13_S_contig18397.5717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18397:493..1644+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAATGCGCGGTCCTCCTCATGCACGGCCGACGAGCGGCCTATTTCCC TTCCCCGTACGTGGACGCCTACGGGGAGAGGCAGCGGCACAGCTTCAGGG GGAGGCCCTTGTACTTGGACCAGCGTCGCTACGACGTGGTACGCGGGTTG TGGGTGAAGCATCTCGTGGCGCACGAGGTACGCTATCATAGCACGTGTTG TGCGGTATGATTGGTGGTGACTTGAGATATCACCTCACATCATCGTTGGC CGATTTTCAAAGATCGATTCACTCTACAGCATAGAGAATGGCGGTGTCTA TAATGGCGGCGTTGACACTGTCTCGTCGACAGCTTTCCGAAATGAACGTA TTCTTGTGTTGATTGTTTCTGTCATGAAGTAGTCGAGCTTTGAATACCGG TCCAGCGGGGAGTATACTCCCTTGTATCACCTAGGCCGACGATACTCACC GGCGCATTCTTTTTCTTGCCCCTCTTATTTTTGATTATCTTTCGTTTTTT TAGAAGCAAGAGAGTGTGTGTAATTTGCTTTGATTGCTTGTTGACGCCAT TTCGGCAAGCATCAACTGCCGTATGTGTTTTTTTTTTTTTGTCGGTGTTA TGTTGATGGAGTGCGCTGTTGTGTTGGCCGTGTGTGTTCGTGGTGTGCAC CCTTATTGCTCGAGTGAGACGACAACTGTAATCAGACCACCGGTACGACG TGGATGGTTTCCGGCGTTATCACGCGACACACTGAAGCGAGAGCCAATCT CGCGCATGCGAAACGTCAAGTTTGGCACGTTCTCATTAGCTGTGTGATTT GAAAGCCCCCGTTCATCCTTGCTGTACATGTACATGCCGGTTGGTTGTGT GCTTCAGACCCCATACGCCGTCGGTCCTTCCCACAAACACGGCAGGCTGT CGCGGCGAGCGTCTTGTTGCCTGCTGCTGTTGCTGCATTTGTTCGCGCTT TTGTTGATCGAGTGTTCGTCCATGCCGCCCCACTCCCCCCCTTCTGCCCT GCTGACTTTCGCATTGCATTTACATTGCATTTGCTCCCTGTTTTGTTCTG CTATTCGGTGCGCCGCCCCTCCCGCCGCTTGGCTCCCCTCCCTCCCAGGT GGTGCAAAACCGCAGCACCAGCCGGCAGGTCATCATCAACGACCACTACT GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18397:493..1644+

>mRNA_Ecto-sp13_S_contig18397.5717.1 ID=mRNA_Ecto-sp13_S_contig18397.5717.1|Name=mRNA_Ecto-sp13_S_contig18397.5717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18397:493..1644+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGGCCGACGAGCGGCCTATTTCCCTTCCCCGTACGTGGACGCCTA
CGGGGAGAGGCAGCGGCACAGCTTCAGGGGGAGGCCCTTGTACTTGGACC
AGCGTCGCTACGACGTGGTACGCGGGTTGTGGGTGAAGCATCTCGTGGCG
CACGAGGTGGTGCAAAACCGCAGCACCAGCCGGCAGGTCATCATCAACGA
CCACTACTGA
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