prot_Ecto-sp13_S_contig18333.5694.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18333.5694.1
Unique Nameprot_Ecto-sp13_S_contig18333.5694.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length97
Homology
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.460e-54
Identity = 88/96 (91.67%), Postives = 88/96 (91.67%), Query Frame = 0
Query:    1 PPPPRTSQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD 96
            P  P    T H CTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD
Sbjct:  424 PSDPDMDVTEH-CTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD 518          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A7S3XUX9_HETAK (DNA polymerase II subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUX9_HETAK)

HSP 1 Score: 129 bits (325), Expect = 6.530e-35
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 0
Query:    7 SQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD 96
            S        TLL QGHLCPLPL ARPIHW+ D AL LYPLPH  VLAD+T+QY+W   DC + NPGSFP+D SF+VY PAT+ VEFS +D
Sbjct:  203 SDATETLVATLLAQGHLCPLPLPARPIHWKADPALQLYPLPHAVVLADQTDQYKWTYEDCHAFNPGSFPTDFSFIVYTPATQDVEFSKID 292          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A835YQA3_9STRA (DNA polymerase epsilon subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.920e-28
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 0
Query:    1 PPPPRTSQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCC-SLNPGSFPSDSSFVVYRPATRTVEFS 93
            PP       +    KTLL QGHLCPLPLS+RPIH + D AL LYPLP V +LADR+EQ+ W  +D   ++NPGSFPSD SFVVYRP++  VEFS
Sbjct:  429 PPDAPNMDASEHLVKTLLDQGHLCPLPLSSRPIHCQFDAALRLYPLPQVVILADRSEQFSWQYHDSTWAINPGSFPSDFSFVVYRPSSGDVEFS 522          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A7S2WES5_9STRA (DNA polymerase II subunit 2 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WES5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.480e-27
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 0
Query:    1 PPPPRTSQTNHQC-TKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPAT 87
            PP P T  T  +C  ++LL QGHLCPLPL+ RPIHW  D AL L+P+P V +LAD ++QY     DC ++NPGSFP+D SF+VY+P++
Sbjct:   28 PPAPETDAT--ECLVQSLLDQGHLCPLPLTTRPIHWSYDHALRLHPMPDVVILADHSDQYSCTYQDCLAVNPGSFPTDFSFLVYQPSS 113          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A7S2C1W0_9STRA (DNA polymerase II subunit 2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1W0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.730e-27
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0
Query:    3 PPRTSQTNHQCTK----TLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVE 91
            PPR+       T+    T+L QGHLCPLPL++RPIHW+ D AL LYP P + VLAD TE Y W   DC ++NPGSF S+ +F+VYRPA    E
Sbjct:   73 PPRSGDREMDITEHLVATVLDQGHLCPLPLTSRPIHWKYDHALRLYPHPTMVVLADHTEPYNWKYQDCLAINPGSFSSEFAFMVYRPADCDAE 165          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A0V0GIJ1_SOLCH (DNA polymerase II subunit 2 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GIJ1_SOLCH)

HSP 1 Score: 94.4 bits (233), Expect = 4.370e-23
Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = 0
Query:    3 PPRTSQTN---HQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFS 93
            PP T +TN        T++HQ HLCPLPL  +PI W  D  L LYP PH  VL D++EQ  +        NPGSF +D +FV YRP  + VE S
Sbjct:   14 PPSTEETNDPFEHLVATIIHQSHLCPLPLMVQPIIWNYDHGLHLYPTPHTIVLGDKSEQKAFRYTGVTCFNPGSFSNDGTFVAYRPCNQEVELS 107          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A1V9YX49_9STRA (DNA polymerase epsilon subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YX49_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.520e-23
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0
Query:    5 RTSQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD 96
            RT+  + Q  KT++ QGHLCPL LSA+PIHW  D +L L+PLP V VLAD+T+Q++       +++PG F  D SF++YRPAT   E S +D
Sbjct:  432 RTTTVSRQLVKTVIDQGHLCPLSLSAQPIHWAYDGSLQLFPLPDVLVLADKTDQFQVGYAGVAAIHPGPFYVDYSFMLYRPATAVTELSRID 523          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A1V9Z0I7_9STRA (DNA polymerase II subunit 2 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0I7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.060e-22
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    5 RTSQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD 96
            R +  + Q  KT++ QGHLCPLPLSA+P+HW  D++L L+PLP V  LAD+T+QY+       + +PG F  D SF++YRP++   E S +D
Sbjct:  312 RMTTVSRQLVKTIVDQGHLCPLPLSAQPVHWAFDNSLHLFPLPDVICLADKTDQYQVGYAGVTAFHPGPFYVDYSFMLYRPSSGVAEISSID 403          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A1R3HTF3_9ROSI (DNA polymerase II subunit 2 n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HTF3_9ROSI)

HSP 1 Score: 97.4 bits (241), Expect = 9.080e-22
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 0
Query:    3 PPRTSQTN---HQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHV 95
            PP T +T+        T++HQ HLCPLPL  +PI W  D  L LYP PH  +L DR+EQ  +        NPGSF  D +FV YRP T+ +EFS V
Sbjct:  342 PPSTEETDDPFEHLVATIIHQSHLCPLPLFVQPIIWNYDHGLQLYPTPHTIILGDRSEQKAFKYTGITCFNPGSFSDDGTFVAYRPCTQEIEFSAV 437          
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Match: A0A024TMJ7_9STRA (DNA polymerase epsilon subunit n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMJ7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.310e-21
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 0
Query:    6 TSQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVAVLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD 96
            ++  +    KTL+ QGHLCPLP+ ARPIHW  D +L L+PLP V +LAD+ +Q++         +PG F  D SFV+YRP+T T E S VD
Sbjct:  430 SNDVSRHLVKTLVDQGHLCPLPIPARPIHWAYDSSLQLFPLPAVLILADKCDQFQVNYAGVSVFHPGPFHVDYSFVLYRPSTNTAEISRVD 520          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18333.5694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD49_ECTSI1.460e-5491.67DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
A0A7S3XUX9_HETAK6.530e-3563.33DNA polymerase II subunit 2 n=1 Tax=Heterosigma ak... [more]
A0A835YQA3_9STRA2.920e-2859.57DNA polymerase epsilon subunit n=1 Tax=Tribonema m... [more]
A0A7S2WES5_9STRA1.480e-2754.55DNA polymerase II subunit 2 (Fragment) n=1 Tax=Rhi... [more]
A0A7S2C1W0_9STRA2.730e-2753.76DNA polymerase II subunit 2 n=1 Tax=Florenciella p... [more]
A0A0V0GIJ1_SOLCH4.370e-2346.81DNA polymerase II subunit 2 (Fragment) n=1 Tax=Sol... [more]
A0A1V9YX49_9STRA5.520e-2350.00DNA polymerase epsilon subunit n=1 Tax=Achlya hypo... [more]
A0A1V9Z0I7_9STRA7.060e-2246.74DNA polymerase II subunit 2 (Fragment) n=1 Tax=Thr... [more]
A0A1R3HTF3_9ROSI9.080e-2246.88DNA polymerase II subunit 2 n=1 Tax=Corchorus olit... [more]
A0A024TMJ7_9STRA1.310e-2148.35DNA polymerase epsilon subunit n=2 Tax=Aphanomyces... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007185DNA polymerase alpha/delta/epsilon, subunit BPFAMPF04042DNA_pol_E_Bcoord: 7..59
e-value: 3.3E-12
score: 46.2
IPR016266DNA polymerase epsilon, subunit BPANTHERPTHR12708DNA POLYMERASE EPSILON SUBUNIT Bcoord: 6..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18333contigEcto-sp13_S_contig18333:3140..3430 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18333.5694.1mRNA_Ecto-sp13_S_contig18333.5694.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18333 3140..3430 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18333.5694.1 ID=prot_Ecto-sp13_S_contig18333.5694.1|Name=mRNA_Ecto-sp13_S_contig18333.5694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
PPPPRTSQTNHQCTKTLLHQGHLCPLPLSARPIHWELDDALSLYPLPHVA
VLADRTEQYRWLLNDCCSLNPGSFPSDSSFVVYRPATRTVEFSHVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007185DNA_pol_a/d/e_bsu
IPR016266POLE2