mRNA_E-siliculosus-1a_F_contig1069.486.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 4.810e-156 Identity = 225/247 (91.09%), Postives = 235/247 (95.14%), Query Frame = 1 Query: 1552 AAPMDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSSTCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCWLLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPSVGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL 2292
AAPMDSAEGG+DYYDSGDE GNDLG VMKENPSLW MFIMAYL++WV GLAFSSTCFNRSRFYRGGLCM+GHNPI+R+IFVPFLVL+VVPAFGIFTAPVM CW LCR+CFLLG VDC+FPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWL KRKLRDLCGITRVMTA+DPLATAGNEPSVG Q IADIEL EQGTYD EFAQAVVSVAGIMEEGIFRGITLYL
Sbjct: 2 AAPMDSAEGGSDYYDSGDEQGNDLGDVMKENPSLWAMFIMAYLVVWVQGLAFSSTCFNRSRFYRGGLCMQGHNPISRMIFVPFLVLVVVPAFGIFTAPVMTCWSLCRVCFLLGRVDCDFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Match: A0A6H5JF96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF96_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.310e-48 Identity = 113/247 (45.75%), Postives = 121/247 (48.99%), Query Frame = 1 Query: 1552 AAPMDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSSTCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCWLLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPSVGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL 2292
AAP DSAEGG+DYYDSGDEHGNDLG VMKEN S C NRSRFYRGGLCMKGHNPI+RVI + + LA WL +RKLRD CGITRVMTA+DPL AGNEPSVG Q IA IELYEQGTYD EFAQAV+SVA IMEEG+F ITLYL
Sbjct: 2 AAPTDSAEGGSDYYDSGDEHGNDLGDVMKENRS--------------------DKCLNRSRFYRGGLCMKGHNPISRVIMI------------------------------------------------------------------------------LSLA---------WLCERKLRDPCGITRVMTADDPLGIAGNEPSVGAQGIAGIELYEQGTYDQEFAQAVISVAAIMEEGVFCEITLYL 141 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1069.486.1 >prot_E-siliculosus-1a_F_contig1069.486.1 ID=prot_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=245bp MDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSback to top mRNA from alignment at E-siliculosus-1a_F_contig1069:3290..6963- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1069.486.1 ID=mRNA_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:3290..6963- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:3290..6963- >mRNA_E-siliculosus-1a_F_contig1069.486.1 ID=mRNA_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1470bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:3290..6963- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |