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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 4.810e-156 Identity = 225/247 (91.09%), Postives = 235/247 (95.14%), Query Frame = 1
Query: 1552 AAPMDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSSTCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCWLLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPSVGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL 2292
AAPMDSAEGG+DYYDSGDE GNDLG VMKENPSLW MFIMAYL++WV GLAFSSTCFNRSRFYRGGLCM+GHNPI+R+IFVPFLVL+VVPAFGIFTAPVM CW LCR+CFLLG VDC+FPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWL KRKLRDLCGITRVMTA+DPLATAGNEPSVG Q IADIEL EQGTYD EFAQAVVSVAGIMEEGIFRGITLYL
Sbjct: 2 AAPMDSAEGGSDYYDSGDEQGNDLGDVMKENPSLWAMFIMAYLVVWVQGLAFSSTCFNRSRFYRGGLCMQGHNPISRMIFVPFLVLVVVPAFGIFTAPVMTCWSLCRVCFLLGRVDCDFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248
BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Match: A0A6H5JF96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF96_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.310e-48 Identity = 113/247 (45.75%), Postives = 121/247 (48.99%), Query Frame = 1
Query: 1552 AAPMDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSSTCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCWLLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPSVGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL 2292
AAP DSAEGG+DYYDSGDEHGNDLG VMKEN S C NRSRFYRGGLCMKGHNPI+RVI + + LA WL +RKLRD CGITRVMTA+DPL AGNEPSVG Q IA IELYEQGTYD EFAQAV+SVA IMEEG+F ITLYL
Sbjct: 2 AAPTDSAEGGSDYYDSGDEHGNDLGDVMKENRS--------------------DKCLNRSRFYRGGLCMKGHNPISRVIMI------------------------------------------------------------------------------LSLA---------WLCERKLRDPCGITRVMTADDPLGIAGNEPSVGAQGIAGIELYEQGTYDQEFAQAVISVAAIMEEGVFCEITLYL 141
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 735 |
| Model size | 2454 |
| Exons | 5 |
| Ec32 ortholog | Ec-12_000100.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1069.486.1 >prot_E-siliculosus-1a_F_contig1069.486.1 ID=prot_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=245bp
MDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFS
STCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCW
LLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVM
LRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPS
VGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1069:3290..6963- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1069.486.1 ID=mRNA_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:3290..6963- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTGCAAGCAGGGCCATGCTGGTTTGTCTCAGCCAAGACCTACAGCAGAT
GTGAATAGGGTGAGGGTACGTGTATCTCTCGGCCAGTTCTTTCTTGGTGG
TATGCACCCTACACAGCAGTCCGGTGTGCCTTCGGGTTCCCTACAACAAG
CAGTTTTCCTGCTGCGCCCGGCACCCTCTTGTCACTTACCTAGGATCAGG
GGTGCTAACATTTGTGGTTTCCGCCAACTTTATTGTAGTGGCCCATCAGA
TCCGTGGGGACGAAGCATTGCCAAAGAGTCTTGAGGCTTCCCCACGACTC
TAAAACACTCTAAAACCGGGAATGCACAATAAACCCAAGGAGACCATGTC
ACAAAAAACGCGTCGGGTGTACGGAGAGTCCAGAGGCGAAATAGAGGCAG
CAGCAGTGGGTCAGGAATCTTGACCGAACATCTGTCTGTCATGATGGTGC
TGGGAGCCACGGACCCTCATCTCCTAAACTGTGGGTTGTGGTATGGCCTG
TGGTGCTGTAGACTTCAGCAGTAGACCCTCAGCTCCAGGTCAGGGGTCGG
GGCGCCTAAAAACATCATGTGGTGTCGGTTCAGATTGCGGACTTACTGTG
TGATTGCCACTCTATATAAATCACTCATTTCCCCGGTGGTTCCAGATCTG
GATATGCCAGCAGCCATGTCACATCTATGACCTAAATGCCACGATAGGGG
GGGCACTTTTTGCAGCCTCTCGGCCTGGGTTACAGGTAACTTCTTTGAAT
TTTACCCCGCTATCATGATGTCCGTATTGATCCAACATGTATGGTACTTC
TCCAGTGCTGACTGTGGACTTGAACCTTCATCCTAAGACTCCTCCCAGTC
GGCCCGTCGGACGAAAAGAACGCCCACAGAAACCCACAGTAGTGTTGCAT
GTTTTGTTGCAATTTCAAGAGTCGGGTTAGGAACTATTTGACAGCCCGTT
TGTGCAGTTAGTTGGAGATTGACAATTTGTTTGTGCATGGAAATACATCC
GTGTTCCCGTCTAATAACCCCGGATGTGCAACAGTATGGACTGAGTGTGT
TTGCTTTCCCCTGTCCACGCAAACTTTGTCTGCCGCCAAACCGGTCGCTG
TCACCCCAGGAAACGAACATCATTTGGCGCACGATCGCACACCTGCCTAC
TAGAATAATAGTATTGTTGTCGTTCACTGTCGGAGCTTCTAGCTTGTTGT
CGCTTGCTTTTCTGCCATGAATTCTCCTTGAAGACTATTATGTGCCCTCG
GTTCGCACCACTTCTTTGCCCACGACGTGTCCACTTTGCCCCAGCACGTG
GTCGAGATTCCTACACGAATATATTTACCGTGCCGTTTGCGCGAAGCTTC
CACGACAAGCCGAAGTGTGTCTCCACCCCAGCTAGCCAGGCCGCAGATAT
TTGTGCGTTTTCGGTGATCACACCTGCCTCTCTCATTACCCCTCGGTCCT
TATAAGCTTAAGCTTGTCGGTGCTCTGGCTGGCCTGCTACAAGCAGAACA
CACACGCAAATCGGTTCTCACACAGGACAGGTGGACTCCATTCGTCGTAA
GGCAGCACCCATGGACTCTGCGGAGGGGGGTACCGACTACTATGATTCTG
GAGACGAACACGGAAACGACCTCGGCGTCGTGATGAAAGAAAATCCTTCT
CTATGGGTATGTCGTAGCATTTTCATAGCAAACCGGCCGTTTTTGTATAT
GCTCCTGTGTACGGAGGTGGCGAGCTGAGCTCTGACCTCCCTTACTTGTT
GCCATGCTGTGAAACATATCGCAACTGGACTTTTGACCATCTGCAAACAG
TTTGTAAATGCTCTCACGTGGTAAGACTGTTGGTGAGATCATTTTTTATG
CCTCGAAGGACAAGGAAATTCGGGTAGCCGGTACTTTTCGATTTCGGGTG
TGTGAATGCCCAGCTAGCAAACCGCCTTCTGTCGCCACCGCAGCCATGAG
CGAGGGGCAACTGTTGAACGTCCCATTGTGGTTCAACGACAAGTGAGGTT
GTTTCCCTTTTCCTGGGTTGACTTGATGCTGTCACAGGGCATGTTCATCA
TGGCATATCTGATGATGTGGGTTACCGGCTTGGCGTTTTCGTCCACGTGA
GTGCTACACACACAACACCAGTGTAACCACACTTCCGGAAGTTGTGAAAT
ACAAGCTGGCTGACCGGAGCTGAGTGCATTGTCGATTGAGCTTTCTGCAG
ACACAGTCAAGTCACAACGGCGGGCTGACGCGTGTAGTATTGCGTGCGAT
GGTTGTTGACAATGTCATGAACGAAATGCCAGCACGCGATACAGTGAGTG
AGTTGAAAGAGCTATTTCATGGTAGGCGCCGATCGTTTTGTTCTTCCCTC
TTGTCTGAACCCAAGGGCAGCGCCAGGGATTGATGTATGCATCACGACGA
ATGTCGCAGAAATCCCCACTGAAGTCGTCTCGAATGATGCCTCTGCCACC
GCCCCAGGTGCTTCAACCGTTCCAGGTTCTACCGGGGGGGCTTGTGTATG
AAGGGCCACAACCCCATCGCGAGGGTGATATTTGTGGTGGGTCTTTGGCG
GCGACCGTAGAGGACACAGAAGCGCGGTCGCGACGATGATACCAACGAAA
TGACTCACCCCCGTCTACTTTTGGTCCTGAATTCTTGTTTCGTTTTGATG
GCGACGGGCTGCCCCAAACCCATCCAGAACCCCATCGCACGGCACCCTTT
CCTGTTGCATAACTTCCGTCGCGGCGTCCGTTACGAAAAATTGCTTGTAA
TTTCGCACTCCGGCTCCTTCAAAACTGTCTACACTTAACTCGCTGTGCCC
CTTTTTGTGCGTCTTACTACGTCGTTTGTTCCCCCAGCCGTTCCTCGTAC
TTATAGTCGTTCCAGCATTCGGGATCTTCACGGCGCCAGTCATGATGTGC
TGGTTACTCTGCCGAATATGTTTCCTTCTCGGAGGAGTTGACTGCAACTT
CCCCGGTAAGCTGTCAAGTGGCTTCGTAACTTTCTCAAACCCTCACGGAA
CGGTGACGTTTCGTAACGGTGACGTTTCGTAATCTTCGTGCTGGCCTAGA
ATGAAGTTCGAAGAGCGCGACAAAAGCATCCTTCTTTATCTACCCGAGCC
CACTCTCCGCCCTCCGTCCGCGCTCCGTACAGCGGGATGGCTCATGAGGC
CCCCCCAGCGACGGCGCCATCTCTCCAACTTTCCGAGCGGGAGAGAACGG
CGCTGGAAACGTCGGGGCTGGCTCGTCATGCTGCGAGCTCGTCACCAAAT
CTTCTTGGCACAGCTACAGCAGAATGATTCTCAGCCCTGGTTAAGCAAGC
GGAAGTTGAGAGATCTGTGTGGTATCACGCGGGTGATGACGGCGAATGAT
CCCCTAGCAACCGCCGGCAACGAGCCTTCCGTAGGCACGCAAAGGATTGC
TGACATTGAATTGTACGAGCAAGGCACCTATGACCCGGAGTTTGCTCAGG
CTGTGGTTTCGGTCGCGGGTATCATGGAGGAAGGAATTTTTCGCGGGATT
ACCTTGTATCTCTAGGACCTATGGGTGGAGGTTGCTGAACCGAACCGGTT
TTGTCGCCGAGCGGGAAACGTACAGCAAACAGGGTGGTGATTTGATAGAC
AGATGGTAGTCATCTGGTGGTAACACTGACGACACTAATGTACACAGAAC
CAGCCAGGCGCAAGGCCGTCAGCT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:3290..6963- >mRNA_E-siliculosus-1a_F_contig1069.486.1 ID=mRNA_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1470bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:3290..6963- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTCTGCGGAGGGGGGTACCGACTACTATGATTCTGGAGACGAACA
CGGAAACGACCTCGGCGTCGTGATGAAAGAAAATCCTTCTCTATGGATGG
ACTCTGCGGAGGGGGGTACCGACTACTATGATTCTGGAGACGAACACGGA
AACGACCTCGGCGTCGTGATGAAAGAAAATCCTTCTCTATGGGGCATGTT
CATCATGGCATATCTGATGATGTGGGTTACCGGCTTGGCGTTTTCGTCCA
CGGCATGTTCATCATGGCATATCTGATGATGTGGGTTACCGGCTTGGCGT
TTTCGTCCACGTGCTTCAACCGTTCCAGGTTCTACCGGGGGGGCTTGTGT
ATGAAGGGCCACAACCCCATCGCGAGGGTGATATTTGTGGTGCTTCAACC
GTTCCAGGTTCTACCGGGGGGGCTTGTGTATGAAGGGCCACAACCCCATC
GCGAGGGTGATATTTGTGCCGTTCCTCGTACTTATAGTCGTTCCAGCATT
CGGGATCTTCACGGCGCCAGTCATGATGTGCTGGTTACTCTGCCGAATAT
GTTTCCTTCTCGGAGGAGTTGACTGCAACTTCCCCGCCGTTCCTCGTACT
TATAGTCGTTCCAGCATTCGGGATCTTCACGGCGCCAGTCATGATGTGCT
GGTTACTCTGCCGAATATGTTTCCTTCTCGGAGGAGTTGACTGCAACTTC
CCCGCGGGATGGCTCATGAGGCCCCCCCAGCGACGGCGCCATCTCTCCAA
CTTTCCGAGCGGGAGAGAACGGCGCTGGAAACGTCGGGGCTGGCTCGTCA
TGCTGCGAGCTCGTCACCAAATCTTCTTGGCACAGCTACAGCAGAATGAT
TCTCAGCCCTGGTTAAGCAAGCGGAAGTTGAGAGATCTGTGTGGTATCAC
GCGGGTGATGACGGCGAATGATCCCCTAGCAACCGCCGGCAACGAGCCTT
CCGTAGGCACGCAAAGGATTGCTGACATTGAATTGTACGAGCAAGGCACC
TATGACCCGGAGTTTGCTCAGGCTGTGGTTTCGGTCGCGGGTATCATGGA
GGAAGGAATTTTTCGCGGGATTACCTTGTATCTCTAGCGGGATGGCTCAT
GAGGCCCCCCCAGCGACGGCGCCATCTCTCCAACTTTCCGAGCGGGAGAG
AACGGCGCTGGAAACGTCGGGGCTGGCTCGTCATGCTGCGAGCTCGTCAC
CAAATCTTCTTGGCACAGCTACAGCAGAATGATTCTCAGCCCTGGTTAAG
CAAGCGGAAGTTGAGAGATCTGTGTGGTATCACGCGGGTGATGACGGCGA
ATGATCCCCTAGCAACCGCCGGCAACGAGCCTTCCGTAGGCACGCAAAGG
ATTGCTGACATTGAATTGTACGAGCAAGGCACCTATGACCCGGAGTTTGC
TCAGGCTGTGGTTTCGGTCGCGGGTATCATGGAGGAAGGAATTTTTCGCG
GGATTACCTTGTATCTCTAG back to top
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