Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.46.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.910e-8 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 Query: 1 MIVKYEGAIHHGTMEGQGRAEYDDGE 78
MIVKYEGAI+HGTMEGQGRAEYDDGE
Sbjct: 1 MIVKYEGAIYHGTMEGQGRAEYDDGE 26
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 108 |
| Model size | 108 |
| Exons | 1 |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927503.863287-CDS-E-siliculosus-1a_F_contig10:124244..124352 | 1622927503.863287-CDS-E-siliculosus-1a_F_contig10:124244..124352 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10 124245..124352 + |
| 1696318555.1307352-CDS-E-siliculosus-1a_F_contig10:124244..124352 | 1696318555.1307352-CDS-E-siliculosus-1a_F_contig10:124244..124352 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10 124245..124352 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.46.1 >prot_E-siliculosus-1a_F_contig10.46.1 ID=prot_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=36bp
MIVKYEGAIHHGTMEGQGRAEYDDGEASFLTALRE* back to topmRNA from alignment at E-siliculosus-1a_F_contig10:124245..124352+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10.46.1 ID=mRNA_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124245..124352+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:124245..124352+ >mRNA_E-siliculosus-1a_F_contig10.46.1 ID=mRNA_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124245..124352+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGAATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATG
GAAGGCCAAGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCAC
CGCTCTTCGCGAGTGA back to top
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