mRNA_E-siliculosus-1a_F_contig10.46.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10.46.1
Unique NamemRNA_E-siliculosus-1a_F_contig10.46.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10.46.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-8
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 MIVKYEGAIHHGTMEGQGRAEYDDGE 78
            MIVKYEGAI+HGTMEGQGRAEYDDGE
Sbjct:    1 MIVKYEGAIYHGTMEGQGRAEYDDGE 26
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U8_ECTSI1.910e-896.15Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10contigE-siliculosus-1a_F_contig10:124245..124352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size108
Model size108
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.863287-CDS-E-siliculosus-1a_F_contig10:124244..1243521622927503.863287-CDS-E-siliculosus-1a_F_contig10:124244..124352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 124245..124352 +
1696318555.1307352-CDS-E-siliculosus-1a_F_contig10:124244..1243521696318555.1307352-CDS-E-siliculosus-1a_F_contig10:124244..124352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10 124245..124352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10.46.1prot_E-siliculosus-1a_F_contig10.46.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10 124245..124352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10.46.1

>prot_E-siliculosus-1a_F_contig10.46.1 ID=prot_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=36bp
MIVKYEGAIHHGTMEGQGRAEYDDGEASFLTALRE*
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mRNA from alignment at E-siliculosus-1a_F_contig10:124245..124352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10.46.1 ID=mRNA_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124245..124352+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:124245..124352+

>mRNA_E-siliculosus-1a_F_contig10.46.1 ID=mRNA_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124245..124352+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGAATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATG
GAAGGCCAAGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCAC
CGCTCTTCGCGAGTGA
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