mRNA_E-siliculosus-1a_F_contig10.46.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig10.46.1
Unique Name	mRNA_E-siliculosus-1a_F_contig10.46.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig10.46.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-8
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1

Query:    1 MIVKYEGAIHHGTMEGQGRAEYDDGE 78
            MIVKYEGAI+HGTMEGQGRAEYDDGE
Sbjct:    1 MIVKYEGAIYHGTMEGQGRAEYDDGE 26

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10.46.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7G0U8_ECTSI	1.910e-8	96.15	Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig10	contig	E-siliculosus-1a_F_contig10:124245..124352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	108
Model size	108
Exons	1
Hectar predicted targeting category	no signal peptide or anchor

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927503.863287-CDS-E-siliculosus-1a_F_contig10:124244..124352	1622927503.863287-CDS-E-siliculosus-1a_F_contig10:124244..124352	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig10 124245..124352 +
1696318555.1307352-CDS-E-siliculosus-1a_F_contig10:124244..124352	1696318555.1307352-CDS-E-siliculosus-1a_F_contig10:124244..124352	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig10 124245..124352 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig10.46.1	prot_E-siliculosus-1a_F_contig10.46.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig10 124245..124352 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10:124245..124352+
coding sequence from alignment at E-siliculosus-1a_F_contig10:124245..124352+

protein sequence of mRNA_E-siliculosus-1a_F_contig10.46.1

>prot_E-siliculosus-1a_F_contig10.46.1 ID=prot_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=36bp
MIVKYEGAIHHGTMEGQGRAEYDDGEASFLTALRE*

mRNA from alignment at E-siliculosus-1a_F_contig10:124245..124352+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10.46.1 ID=mRNA_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124245..124352+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:124245..124352+

>mRNA_E-siliculosus-1a_F_contig10.46.1 ID=mRNA_E-siliculosus-1a_F_contig10.46.1|Name=mRNA_E-siliculosus-1a_F_contig10.46.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124245..124352+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGAATGATCGTCAAATACGAAGGAGCCATCCACCACGGCACTATG
GAAGGCCAAGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCAC
CGCTCTTCGCGAGTGA