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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Match: D7G3N3_ECTSI (Importin alpha-7 subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N3_ECTSI) HSP 1 Score: 308 bits (788), Expect = 7.500e-102 Identity = 272/290 (93.79%), Postives = 274/290 (94.48%), Query Frame = 1 Query: 1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSESDAGKASWEPTLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------QPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME 852
MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSS+SDA TLLVMLSLLYTILD GGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSP +SGGVAARGGKRA AVGGCEVGDME
Sbjct: 1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSDSDA------ETLLVMLSLLYTILDEGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPRVSGGVAARGGKRADAVGGCEVGDME 284
BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Match: A0A6H5KJL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE) HSP 1 Score: 291 bits (745), Expect = 8.170e-94 Identity = 247/306 (80.72%), Postives = 253/306 (82.68%), Query Frame = 1 Query: 1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSESDAGKASWEP----------------------TLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME 852
MVELEEGNALCKREAAWVFLNMCECSGDP TIIPEIVGHGVIAAVCENLSS+SDAGKAS EP TLLVMLSLLYTILD GGLGSTLTLSEYTTLVEEAQGFDKI+ LANDHDDMEIYDKAMDIIQAFHDSQ+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QPGCNFKSE S RQPLGTV+QQHLLATGSSSAL+PPL+GGVAA G KR AAV GCEVGDME
Sbjct: 88 MVELEEGNALCKREAAWVFLNMCECSGDPRATIIPEIVGHGVIAAVCENLSSDSDAGKASREPVDASAKRLPCTPPSTPPRNPAETLLVMLSLLYTILDEGGLGSTLTLSEYTTLVEEAQGFDKIISLANDHDDMEIYDKAMDIIQAFHDSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEASPIASPTAEQEEEQQPGCNFKSETKSSRQPLGTVRQQHLLATGSSSALAPPLTGGVAAGGRKRTAAVRGCEVGDME 393
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 855 |
| Model size | 855 |
| Exons | 3 |
| Ec32 ortholog | Ec-19_001000.1 |
| Ec32 ortholog description | Armadillo-type fold |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1064.452.1 >prot_E-siliculosus-1a_F_contig1064.452.1 ID=prot_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=285bp
MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENL
SSESDAGKASWEPTLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGF
DKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDEDDDDDELVFGVAHATAA
AAAAAATRACAVSSNHDDSSDMMSDDSLSDDSFHRELAGAASGPITPPPA
AHRRPSEASPIAPPTAEQEEEQQPGCNFKSEKNSPRQPLGTVQQQHLLAT
GSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME* back to topmRNA from alignment at E-siliculosus-1a_F_contig1064:65..1876- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1064.452.1 ID=mRNA_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:65..1876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGCTAGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTG
GGTGTTCCTTAACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAA
TCCCCGAAATCGTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTC
AGCAGCGAGTCCGATGCAGGCAAGGCCAGCTGGGAGCCGGTTGTGTTGTC
ATTGTCATGGCTGCTGCCGCTGTTGTTGTTGTTGTTGTTGCTGATTTTTG
TGTTGCTGTTGTTGTTGTTGTTGTTGCTGATTTTTGTGTTGTTGCTGCCG
CTGTTGTTGTTGTTGTTGTTGTTGCTGATTTTTGTGTTGTTCTCTTTAGT
TTGTTGTTGCTGGTGTTGTCATTGTCGGTGTTGGTGTTGGTGGTGTTGCT
GCTGTTGTTCTTGTTTCCGCCACCAGCAGTTACCCCTCCTGCACTCCTGC
ACGTGCATGCCTTCGCCTAACGCTTACCCTGCACACCGCTGTCAAACCCT
CCTCGCAACCCCGCAGAGACTCTCCTGGTGATGCTGTCCCTGCTCTACAC
CATACTCGACGCGGGCGGGCTTGGATCAACCCTTACGCTGTCGGAGTACA
CCACCCTAGTAGAGGAGGCCCAGGGGTTCGACAAGATCATGGGCCTCGCG
AACGACCACGACGACATGGAGATCTACGACAAGGTACTGAGATCTTTGAC
ATAGTATTAAGAACTATGACATATTATATCTCTGACAAGGTATTGAGATC
TACGACACGATCATGGGCCTCGCAAACGACCACGACGACATGTAGATCTA
CGACAAGGTACTGAGATCTACGACATAGTATTGAGATCTACGACAAGGTA
TTGAGACCCACGACATAGTATTGAGATCTACGACAGGTGCTGAGATCTAC
GACAAGGTAAGTGTCCTTTTTTCACCTTACCCTAATTCTTGCACTACAAG
CGAGCAAGATGTGTTGCTGTGGTTCCAGGGTGACATGGAGATCTACGACA
AGGCACTGAGATGTATGGTACAAGATAGTGTCCTAACCTATGTAACCCTT
ACGAGCGAAAGTAATTGCTGTGTAGTCTTGGCTTATGACATTGGGATCTA
CGACAAGGTACGGAGATCTACGACAAGAAAATTTCGGTGTTTACCCTACG
CTCTTATTGTAACCCTTACAAGTAAGCACGAGTAAGCCGTGTAGTCTTGG
CTTATGACATGGAGATCTACGACAAGAAATTGAGCCTAGACCCGAGATCG
AGGCTTCTTAACAGCGGTCCCGCCGGTACCATCCCTGCCTGTTTCTCCCG
GCGGTCTCCAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAA
GACGAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCAC
AGCCGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCA
ATCATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGAC
AGCTTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCC
GCCGGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGA
CGGCAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAA
AAAAATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACT
CGCCACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTG
CTGCGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGC
GATATGGAGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1064:65..1876- >mRNA_E-siliculosus-1a_F_contig1064.452.1 ID=mRNA_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:65..1876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGCTAGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTG
GGTGTTCCTTAACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAA
TCCCCGAAATCGTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTC
AGCAGCGAGTCCGATGCAGGCAAGGCCAGCTGGGAGCCGATGGTGGAGCT
AGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTGGGTGTTCCTTA
ACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAATCCCCGAAATC
GTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTCAGCAGCGAGTC
CGATGCAGGCAAGGCCAGCTGGGAGCCGACTCTCCTGGTGATGCTGTCCC
TGCTCTACACCATACTCGACGCGGGCGGGCTTGGATCAACCCTTACGCTG
TCGGAGTACACCACCCTAGTAGAGGAGGCCCAGGGGTTCGACAAGATCAT
GGGCCTCGCGAACGACCACGACGACATGGAGATCTACGACAAGACTCTCC
TGGTGATGCTGTCCCTGCTCTACACCATACTCGACGCGGGCGGGCTTGGA
TCAACCCTTACGCTGTCGGAGTACACCACCCTAGTAGAGGAGGCCCAGGG
GTTCGACAAGATCATGGGCCTCGCGAACGACCACGACGACATGGAGATCT
ACGACAAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAAGAC
GAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCACAGC
CGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCAATC
ATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGACAGC
TTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCCGCC
GGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGACGG
CAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAAAAA
AATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACTCGC
CACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTGCTG
CGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGCGAT
ATGGAGTAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAAGA
CGAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCACAG
CCGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCAAT
CATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGACAG
CTTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCCGC
CGGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGACG
GCAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAAAA
AAATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACTCG
CCACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTGCT
GCGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGCGA
TATGGAGTAG back to top
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