mRNA_E-siliculosus-1a_F_contig1064.452.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Match: D7G3N3_ECTSI (Importin alpha-7 subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N3_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 7.500e-102
Identity = 272/290 (93.79%), Postives = 274/290 (94.48%), Query Frame = 1

Query:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSESDAGKASWEPTLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------QPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME 852
            MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSS+SDA       TLLVMLSLLYTILD GGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      QPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSP +SGGVAARGGKRA AVGGCEVGDME
Sbjct:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSDSDA------ETLLVMLSLLYTILDEGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPRVSGGVAARGGKRADAVGGCEVGDME 284

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BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Match: A0A6H5KJL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 8.170e-94
Identity = 247/306 (80.72%), Postives = 253/306 (82.68%), Query Frame = 1

Query:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSESDAGKASWEP----------------------TLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME 852
            MVELEEGNALCKREAAWVFLNMCECSGDP  TIIPEIVGHGVIAAVCENLSS+SDAGKAS EP                      TLLVMLSLLYTILD GGLGSTLTLSEYTTLVEEAQGFDKI+ LANDHDDMEIYDKAMDIIQAFHDSQ+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  QPGCNFKSE  S RQPLGTV+QQHLLATGSSSAL+PPL+GGVAA G KR AAV GCEVGDME
Sbjct:   88 MVELEEGNALCKREAAWVFLNMCECSGDPRATIIPEIVGHGVIAAVCENLSSDSDAGKASREPVDASAKRLPCTPPSTPPRNPAETLLVMLSLLYTILDEGGLGSTLTLSEYTTLVEEAQGFDKIISLANDHDDMEIYDKAMDIIQAFHDSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEASPIASPTAEQEEEQQPGCNFKSETKSSRQPLGTVRQQHLLATGSSSALAPPLTGGVAAGGRKRTAAVRGCEVGDME 393

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G3N3_ECTSI	7.500e-102	93.79	Importin alpha-7 subunit, putative n=1 Tax=Ectocar...	[more]
A0A6H5KJL7_9PHAE	8.170e-94	80.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Properties


Property Name	Value
Start	1
Stop	1
Cds size	855
Model size	855
Exons	3
Ec32 ortholog	Ec-19_001000.1
Ec32 ortholog description	Armadillo-type fold
Hectar predicted targeting category	other localisation

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1064:65..1876-
coding sequence from alignment at E-siliculosus-1a_F_contig1064:65..1876-

protein sequence of mRNA_E-siliculosus-1a_F_contig1064.452.1

>prot_E-siliculosus-1a_F_contig1064.452.1 ID=prot_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=285bp
MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENL
SSESDAGKASWEPTLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGF
DKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDEDDDDDELVFGVAHATAA
AAAAAATRACAVSSNHDDSSDMMSDDSLSDDSFHRELAGAASGPITPPPA
AHRRPSEASPIAPPTAEQEEEQQPGCNFKSEKNSPRQPLGTVQQQHLLAT
GSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME*

mRNA from alignment at E-siliculosus-1a_F_contig1064:65..1876-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1064.452.1 ID=mRNA_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:65..1876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGCTAGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTG
GGTGTTCCTTAACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAA
TCCCCGAAATCGTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTC
AGCAGCGAGTCCGATGCAGGCAAGGCCAGCTGGGAGCCGGTTGTGTTGTC
ATTGTCATGGCTGCTGCCGCTGTTGTTGTTGTTGTTGTTGCTGATTTTTG
TGTTGCTGTTGTTGTTGTTGTTGTTGCTGATTTTTGTGTTGTTGCTGCCG
CTGTTGTTGTTGTTGTTGTTGTTGCTGATTTTTGTGTTGTTCTCTTTAGT
TTGTTGTTGCTGGTGTTGTCATTGTCGGTGTTGGTGTTGGTGGTGTTGCT
GCTGTTGTTCTTGTTTCCGCCACCAGCAGTTACCCCTCCTGCACTCCTGC
ACGTGCATGCCTTCGCCTAACGCTTACCCTGCACACCGCTGTCAAACCCT
CCTCGCAACCCCGCAGAGACTCTCCTGGTGATGCTGTCCCTGCTCTACAC
CATACTCGACGCGGGCGGGCTTGGATCAACCCTTACGCTGTCGGAGTACA
CCACCCTAGTAGAGGAGGCCCAGGGGTTCGACAAGATCATGGGCCTCGCG
AACGACCACGACGACATGGAGATCTACGACAAGGTACTGAGATCTTTGAC
ATAGTATTAAGAACTATGACATATTATATCTCTGACAAGGTATTGAGATC
TACGACACGATCATGGGCCTCGCAAACGACCACGACGACATGTAGATCTA
CGACAAGGTACTGAGATCTACGACATAGTATTGAGATCTACGACAAGGTA
TTGAGACCCACGACATAGTATTGAGATCTACGACAGGTGCTGAGATCTAC
GACAAGGTAAGTGTCCTTTTTTCACCTTACCCTAATTCTTGCACTACAAG
CGAGCAAGATGTGTTGCTGTGGTTCCAGGGTGACATGGAGATCTACGACA
AGGCACTGAGATGTATGGTACAAGATAGTGTCCTAACCTATGTAACCCTT
ACGAGCGAAAGTAATTGCTGTGTAGTCTTGGCTTATGACATTGGGATCTA
CGACAAGGTACGGAGATCTACGACAAGAAAATTTCGGTGTTTACCCTACG
CTCTTATTGTAACCCTTACAAGTAAGCACGAGTAAGCCGTGTAGTCTTGG
CTTATGACATGGAGATCTACGACAAGAAATTGAGCCTAGACCCGAGATCG
AGGCTTCTTAACAGCGGTCCCGCCGGTACCATCCCTGCCTGTTTCTCCCG
GCGGTCTCCAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAA
GACGAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCAC
AGCCGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCA
ATCATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGAC
AGCTTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCC
GCCGGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGA
CGGCAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAA
AAAAATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACT
CGCCACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTG
CTGCGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGC
GATATGGAGTAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1064:65..1876-

>mRNA_E-siliculosus-1a_F_contig1064.452.1 ID=mRNA_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:65..1876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGCTAGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTG
GGTGTTCCTTAACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAA
TCCCCGAAATCGTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTC
AGCAGCGAGTCCGATGCAGGCAAGGCCAGCTGGGAGCCGATGGTGGAGCT
AGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTGGGTGTTCCTTA
ACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAATCCCCGAAATC
GTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTCAGCAGCGAGTC
CGATGCAGGCAAGGCCAGCTGGGAGCCGACTCTCCTGGTGATGCTGTCCC
TGCTCTACACCATACTCGACGCGGGCGGGCTTGGATCAACCCTTACGCTG
TCGGAGTACACCACCCTAGTAGAGGAGGCCCAGGGGTTCGACAAGATCAT
GGGCCTCGCGAACGACCACGACGACATGGAGATCTACGACAAGACTCTCC
TGGTGATGCTGTCCCTGCTCTACACCATACTCGACGCGGGCGGGCTTGGA
TCAACCCTTACGCTGTCGGAGTACACCACCCTAGTAGAGGAGGCCCAGGG
GTTCGACAAGATCATGGGCCTCGCGAACGACCACGACGACATGGAGATCT
ACGACAAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAAGAC
GAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCACAGC
CGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCAATC
ATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGACAGC
TTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCCGCC
GGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGACGG
CAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAAAAA
AATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACTCGC
CACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTGCTG
CGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGCGAT
ATGGAGTAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAAGA
CGAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCACAG
CCGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCAAT
CATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGACAG
CTTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCCGC
CGGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGACG
GCAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAAAA
AAATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACTCG
CCACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTGCT
GCGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGCGA
TATGGAGTAG