mRNA_E-siliculosus-1a_F_contig1064.452.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1064.452.1
Unique NamemRNA_E-siliculosus-1a_F_contig1064.452.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Match: D7G3N3_ECTSI (Importin alpha-7 subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N3_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 7.500e-102
Identity = 272/290 (93.79%), Postives = 274/290 (94.48%), Query Frame = 1 
Query:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSESDAGKASWEPTLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------QPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME 852
            MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSS+SDA       TLLVMLSLLYTILD GGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      QPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSP +SGGVAARGGKRA AVGGCEVGDME
Sbjct:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSDSDA------ETLLVMLSLLYTILDEGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPRVSGGVAARGGKRADAVGGCEVGDME 284
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BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Match: A0A6H5KJL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 8.170e-94
Identity = 247/306 (80.72%), Postives = 253/306 (82.68%), Query Frame = 1 
Query:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSESDAGKASWEP----------------------TLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPGCNFKSEKNSPRQPLGTVQQQHLLATGSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME 852
            MVELEEGNALCKREAAWVFLNMCECSGDP  TIIPEIVGHGVIAAVCENLSS+SDAGKAS EP                      TLLVMLSLLYTILD GGLGSTLTLSEYTTLVEEAQGFDKI+ LANDHDDMEIYDKAMDIIQAFHDSQ+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  QPGCNFKSE  S RQPLGTV+QQHLLATGSSSAL+PPL+GGVAA G KR AAV GCEVGDME
Sbjct:   88 MVELEEGNALCKREAAWVFLNMCECSGDPRATIIPEIVGHGVIAAVCENLSSDSDAGKASREPVDASAKRLPCTPPSTPPRNPAETLLVMLSLLYTILDEGGLGSTLTLSEYTTLVEEAQGFDKIISLANDHDDMEIYDKAMDIIQAFHDSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEASPIASPTAEQEEEQQPGCNFKSETKSSRQPLGTVRQQHLLATGSSSALAPPLTGGVAAGGRKRTAAVRGCEVGDME 393
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1064.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3N3_ECTSI7.500e-10293.79Importin alpha-7 subunit, putative n=1 Tax=Ectocar... [more]
A0A6H5KJL7_9PHAE8.170e-9480.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1064contigE-siliculosus-1a_F_contig1064:65..1876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size855
Model size855
Exons3
Ec32 orthologEc-19_001000.1
Ec32 ortholog descriptionArmadillo-type fold
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1064.452.1prot_E-siliculosus-1a_F_contig1064.452.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1064 65..1876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.4399738-CDS-E-siliculosus-1a_F_contig1064:64..5651622927564.4399738-CDS-E-siliculosus-1a_F_contig1064:64..565Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 65..565 -
1696318588.2884805-CDS-E-siliculosus-1a_F_contig1064:64..5651696318588.2884805-CDS-E-siliculosus-1a_F_contig1064:64..565Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 65..565 -
1622927564.4944346-CDS-E-siliculosus-1a_F_contig1064:1193..13581622927564.4944346-CDS-E-siliculosus-1a_F_contig1064:1193..1358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 1194..1358 -
1696318588.2976863-CDS-E-siliculosus-1a_F_contig1064:1193..13581696318588.2976863-CDS-E-siliculosus-1a_F_contig1064:1193..1358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 1194..1358 -
1622927564.5100572-CDS-E-siliculosus-1a_F_contig1064:1687..18761622927564.5100572-CDS-E-siliculosus-1a_F_contig1064:1687..1876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 1688..1876 -
1696318588.306078-CDS-E-siliculosus-1a_F_contig1064:1687..18761696318588.306078-CDS-E-siliculosus-1a_F_contig1064:1687..1876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 1688..1876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1064.452.1

>prot_E-siliculosus-1a_F_contig1064.452.1 ID=prot_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=285bp
MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENL
SSESDAGKASWEPTLLVMLSLLYTILDAGGLGSTLTLSEYTTLVEEAQGF
DKIMGLANDHDDMEIYDKAMDIIQAFHDSQEDEDDDDDELVFGVAHATAA
AAAAAATRACAVSSNHDDSSDMMSDDSLSDDSFHRELAGAASGPITPPPA
AHRRPSEASPIAPPTAEQEEEQQPGCNFKSEKNSPRQPLGTVQQQHLLAT
GSSSALSPPLSGGVAARGGKRAAAVGGCEVGDME*
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mRNA from alignment at E-siliculosus-1a_F_contig1064:65..1876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1064.452.1 ID=mRNA_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:65..1876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGCTAGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTG
GGTGTTCCTTAACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAA
TCCCCGAAATCGTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTC
AGCAGCGAGTCCGATGCAGGCAAGGCCAGCTGGGAGCCGGTTGTGTTGTC
ATTGTCATGGCTGCTGCCGCTGTTGTTGTTGTTGTTGTTGCTGATTTTTG
TGTTGCTGTTGTTGTTGTTGTTGTTGCTGATTTTTGTGTTGTTGCTGCCG
CTGTTGTTGTTGTTGTTGTTGTTGCTGATTTTTGTGTTGTTCTCTTTAGT
TTGTTGTTGCTGGTGTTGTCATTGTCGGTGTTGGTGTTGGTGGTGTTGCT
GCTGTTGTTCTTGTTTCCGCCACCAGCAGTTACCCCTCCTGCACTCCTGC
ACGTGCATGCCTTCGCCTAACGCTTACCCTGCACACCGCTGTCAAACCCT
CCTCGCAACCCCGCAGAGACTCTCCTGGTGATGCTGTCCCTGCTCTACAC
CATACTCGACGCGGGCGGGCTTGGATCAACCCTTACGCTGTCGGAGTACA
CCACCCTAGTAGAGGAGGCCCAGGGGTTCGACAAGATCATGGGCCTCGCG
AACGACCACGACGACATGGAGATCTACGACAAGGTACTGAGATCTTTGAC
ATAGTATTAAGAACTATGACATATTATATCTCTGACAAGGTATTGAGATC
TACGACACGATCATGGGCCTCGCAAACGACCACGACGACATGTAGATCTA
CGACAAGGTACTGAGATCTACGACATAGTATTGAGATCTACGACAAGGTA
TTGAGACCCACGACATAGTATTGAGATCTACGACAGGTGCTGAGATCTAC
GACAAGGTAAGTGTCCTTTTTTCACCTTACCCTAATTCTTGCACTACAAG
CGAGCAAGATGTGTTGCTGTGGTTCCAGGGTGACATGGAGATCTACGACA
AGGCACTGAGATGTATGGTACAAGATAGTGTCCTAACCTATGTAACCCTT
ACGAGCGAAAGTAATTGCTGTGTAGTCTTGGCTTATGACATTGGGATCTA
CGACAAGGTACGGAGATCTACGACAAGAAAATTTCGGTGTTTACCCTACG
CTCTTATTGTAACCCTTACAAGTAAGCACGAGTAAGCCGTGTAGTCTTGG
CTTATGACATGGAGATCTACGACAAGAAATTGAGCCTAGACCCGAGATCG
AGGCTTCTTAACAGCGGTCCCGCCGGTACCATCCCTGCCTGTTTCTCCCG
GCGGTCTCCAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAA
GACGAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCAC
AGCCGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCA
ATCATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGAC
AGCTTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCC
GCCGGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGA
CGGCAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAA
AAAAATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACT
CGCCACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTG
CTGCGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGC
GATATGGAGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1064:65..1876-

>mRNA_E-siliculosus-1a_F_contig1064.452.1 ID=mRNA_E-siliculosus-1a_F_contig1064.452.1|Name=mRNA_E-siliculosus-1a_F_contig1064.452.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:65..1876- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGCTAGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTG
GGTGTTCCTTAACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAA
TCCCCGAAATCGTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTC
AGCAGCGAGTCCGATGCAGGCAAGGCCAGCTGGGAGCCGATGGTGGAGCT
AGAGGAGGGCAACGCTCTGTGCAAGCGGGAGGCGGCTTGGGTGTTCCTTA
ACATGTGCGAGTGCAGCGGTGATCCGGGGGAGACGATAATCCCCGAAATC
GTTGGGCACGGAGTGATCGCGGCGGTCTGCGAGAACCTCAGCAGCGAGTC
CGATGCAGGCAAGGCCAGCTGGGAGCCGACTCTCCTGGTGATGCTGTCCC
TGCTCTACACCATACTCGACGCGGGCGGGCTTGGATCAACCCTTACGCTG
TCGGAGTACACCACCCTAGTAGAGGAGGCCCAGGGGTTCGACAAGATCAT
GGGCCTCGCGAACGACCACGACGACATGGAGATCTACGACAAGACTCTCC
TGGTGATGCTGTCCCTGCTCTACACCATACTCGACGCGGGCGGGCTTGGA
TCAACCCTTACGCTGTCGGAGTACACCACCCTAGTAGAGGAGGCCCAGGG
GTTCGACAAGATCATGGGCCTCGCGAACGACCACGACGACATGGAGATCT
ACGACAAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAAGAC
GAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCACAGC
CGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCAATC
ATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGACAGC
TTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCCGCC
GGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGACGG
CAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAAAAA
AATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACTCGC
CACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTGCTG
CGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGCGAT
ATGGAGTAGGCAATGGACATCATCCAGGCGTTCCACGACAGCCAAGAAGA
CGAGGACGACGACGACGATGAGTTGGTCTTTGGTGTGGCCCACGCCACAG
CCGCCGCCGCCGCCGCCGCCGCCACGCGCGCTTGCGCTGTTAGCTCCAAT
CATGATGATAGCAGCGACATGATGTCCGACGACTCGCTGTCGGACGACAG
CTTCCACAGAGAGCTCGCGGGCGCCGCCTCCGGCCCGATCACCCCGCCGC
CGGCGGCCCATCGCCGTCCCTCCGAAGCGTCACCAATTGCGCCGCCGACG
GCAGAGCAGGAGGAGGAGCAGCAACCAGGGTGCAATTTCAAGAGTGAAAA
AAATTCGCCGAGACAACCGTTAGGAACCGTCCAGCAGCAGCACCTACTCG
CCACCGGGAGTAGTTCGGCGCTTTCTCCCCCTCTCAGCGGCGGCGTTGCT
GCGCGGGGCGGAAAGAGGGCGGCTGCTGTTGGTGGGTGCGAGGTCGGCGA
TATGGAGTAG
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