Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)
HSP 1 Score: 192 bits (487), Expect = 1.020e-54
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 1 SSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
SSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK
Sbjct: 984 SSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 1080
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)
HSP 1 Score: 187 bits (476), Expect = 3.030e-53
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
Query: 1 SSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
SSR+GGRRKAQA LRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK
Sbjct: 893 SSRKGGRRKAQASLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 989
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A6A0A349_HAELA (DNA repair endonuclease UVH1 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A349_HAELA)
HSP 1 Score: 131 bits (329), Expect = 9.970e-38
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 1
Query: 10 RGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
RGG KAQ P +VVVD+REF S LP +LHQQGFELVPL I VGDYVL+P +CVERK+L DL S++SGRLY+Q EAM KHYK PVLLIEF D+
Sbjct: 9 RGGAAKAQ-PRKVVVDMREFMSSLPAVLHQQGFELVPLTIEVGDYVLSPTMCVERKALPDLVSSLASGRLYSQAEAMCKHYKTPVLLIEFEGDR 101
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A3S3NAZ6_9MAGN (DNA repair endonuclease UVH1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NAZ6_9MAGN)
HSP 1 Score: 129 bits (323), Expect = 1.210e-34
Identity = 57/93 (61.29%), Postives = 77/93 (82.80%), Query Frame = 1
Query: 13 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
GGR+ A+ +V+VD+REF S LPN+LHQ+G ++P+ + VGDYVL+P ICVERKS++DLF S +SGRLYNQVE M ++Y++PVLLIEF+ DK
Sbjct: 49 GGRKAAERETQVIVDIREFMSSLPNVLHQKGMRIIPVTLEVGDYVLSPLICVERKSIADLFSSFASGRLYNQVETMARYYRIPVLLIEFSQDK 141
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
UPI001F5D44C3 (DNA repair endonuclease UVH1 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D44C3)
HSP 1 Score: 134 bits (336), Expect = 2.320e-34
Identity = 59/93 (63.44%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 13 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
GGR+ + ++V+VD+REF S LPN+LHQ+G ++P+ + VGDYVL+P ICVERKS+SDLFQS +SGRLYNQVE M+++YK+PVLLIEF+ DK
Sbjct: 747 GGRKPTEKEMQVIVDMREFMSSLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSISDLFQSFASGRLYNQVETMIRYYKIPVLLIEFSQDK 839
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A8J4VB27_9ROSI (ERCC4 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VB27_9ROSI)
HSP 1 Score: 127 bits (320), Expect = 2.470e-34
Identity = 54/93 (58.06%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 13 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
GGR++ + ++V+VD+REF S LPN+LHQ+G ++P+ + VGDY+++P ICVERKS+ DLF S +SGRLY+QVE M+++YK+PVLLIEF+ DK
Sbjct: 35 GGRKEIEREMQVIVDMREFMSSLPNILHQRGMHIIPVTLEVGDYIISPLICVERKSIQDLFMSFTSGRLYHQVETMVRYYKIPVLLIEFSQDK 127
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
UPI000B8CC7E5 (DNA repair endonuclease UVH1-like isoform X3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CC7E5)
HSP 1 Score: 125 bits (315), Expect = 3.500e-34
Identity = 53/93 (56.99%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 13 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
GGR++A+ ++V+VD+REF S LPN+LH +G ++P+ + VGDY+L+P +CVERKS+ DLF S +SGRLY+QVE+M+++Y++PVLLIEF+ DK
Sbjct: 41 GGRKEAEKEMQVIVDVREFMSSLPNMLHLKGMRIIPVTLEVGDYILSPLLCVERKSIQDLFSSFTSGRLYHQVESMVRYYRIPVLLIEFSQDK 133
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A103XQW0_CYNCS (DNA repair nuclease, XPF-type/Helicase n=3 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XQW0_CYNCS)
HSP 1 Score: 126 bits (316), Expect = 5.040e-34
Identity = 54/93 (58.06%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 13 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
GG+++A ++V+VD+REF S LPN+LHQ+G ++P+ + VGDY+L+P ICVERKS+ DLF S +SGRLY+QVE M+++Y++PVLLIEF+ DK
Sbjct: 7 GGQKEADKEMQVIVDMREFMSSLPNVLHQKGMNIIPVTLEVGDYILSPMICVERKSIQDLFSSFASGRLYHQVEMMVRYYRMPVLLIEFSQDK 99
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A5J9WL85_9POAL (ERCC4 domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WL85_9POAL)
HSP 1 Score: 132 bits (332), Expect = 8.040e-34
Identity = 59/93 (63.44%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 13 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
GGR+ ++V+VD+REF S LPN+LHQ+G ++VP+ + VGDYVL+P ICVERKS++DLFQS +SGRLYNQVE M+++YK+PVLLIEF+ DK
Sbjct: 750 GGRKAPDKEMQVIVDMREFMSSLPNVLHQKGIQIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMVRYYKIPVLLIEFSQDK 842
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Match:
A0A1Y1I3K2_KLENI (Structure-specific endonuclease ERCC1-XPF n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3K2_KLENI)
HSP 1 Score: 132 bits (332), Expect = 8.100e-34
Identity = 60/97 (61.86%), Postives = 80/97 (82.47%), Query Frame = 1
Query: 1 SSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 291
S+R+ G R+ ++VVVD+REF S LP++LHQQG ++VP+ + VGDY+L+P++CVERKSL+DLFQS SGRLYNQ EAM ++YK PVLLIEF+ DK
Sbjct: 962 STRKAGGRQKDRAMQVVVDMREFNSSLPSVLHQQGMKIVPVTLEVGDYILSPEVCVERKSLADLFQSFGSGRLYNQAEAMTRYYKTPVLLIEFDQDK 1058
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10615.439.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 1.02e-54 / Id = 100.00 Expect = 3.03e-53 / Id = 97.94 Expect = 9.97e-38 / Id = 70.21 Expect = 1.21e-34 / Id = 61.29 Expect = 2.32e-34 / Id = 63.44 Expect = 2.47e-34 / Id = 58.06 Expect = 3.50e-34 / Id = 56.99 Expect = 5.04e-34 / Id = 58.06 Expect = 8.04e-34 / Id = 63.44 Expect = 8.10e-34 / Id = 61.86 Sequence A0A6H5JEA6_9PHAE D7FH45_ECTSI A0A6A0A349_HAELA A0A3S3NAZ6_9MAGN UPI001F5D44C3 A0A8J4VB27_9ROSI UPI000B8CC7E5 A0A103XQW0_CYNCS A0A5J9WL85_9POAL A0A1Y1I3K2_KLENI Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 0 Stop 0 Cds size 291 Model size 291 Exons 3 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko01000,ko03032,ko03400 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. L EggNOG OGs COG1948@1,KOG0442@2759 EggNOG free text desc. resolution of meiotic recombination intermediates GOs GO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599 KEGG Pathway ko03420,ko03460,map03420,map03460 KEGG ko ko:K10848 Preferred name RAD1 Seed eggNOG ortholog 2880.D7FH45 Seed ortholog evalue 2.8e-45 Seed ortholog score 187.6 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10615.439.1
>prot_E-siliculosus-1a_F_contig10615.439.1 ID=prot_E-siliculosus-1a_F_contig10615.439.1|Name=mRNA_E-siliculosus-1a_F_contig10615.439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=97bp
SSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVL back to top mRNA from alignment at E-siliculosus-1a_F_contig10615:636..1737-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10615.439.1 ID=mRNA_E-siliculosus-1a_F_contig10615.439.1|Name=mRNA_E-siliculosus-1a_F_contig10615.439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1102bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10615:636..1737- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)AGCAGCAGGAGGGGAGGGCGACGGAAGGCACAAGCGCCTCTCAGGGTGGT
CGTGGACCTTCGAGAGTTCCGCAGCGTTCTTCCTAACCTGCTGCATCAG G
TAGAATCCGACACGGCGGTTTTACTGTTAATTTTGTGTTCCTCTATCTTG
CGTCACACACATGTCTCCCTTGTCTACATCTCCATCTGGTCAATGGTCTA
ACCGCTACAGTACATGAGGCATCCAAAACATGAGTACGCCCCCCCGCGAC
CCCCCCCGTTCTCCAGCAAGGGTTTGAGCTGGTCCCGTTGGTCATAGCGG
TCGGTGATTATGTCCTGACGCCCCAGATCTGCGTCGAGCGAAAGAGCCTG
TCCGACTTGTTCCAGTCCATGTCTTCCGGCAGGCTGTACAACCAG GTTTG
TATTTTTTTTTACGGGGAGTGGTGGCAATTGGCGGAGGAATCACCATGCC
TGCCTGTGGTTGATGTTTTCGTATTGGTAGGATGGCGTAGCCGTTGTCGT
TGCCGTTGACTTTGTGCCGTGGCTTGGGTGCCGTTGTTGTTGATGGTGTT
GTTGTTCCTCTCGCTTAACGCGCATGCATGCGAAAGTGAAGAACCGGCCG
AGAGCGATGGTGATGGTGCCGATTTGATGCCCGTGGATGAGTGGGGGCGG
TCAAGTTTCGTGTTGTACTTGTTGCTGTCAAGGACACCGTCTCTTTTTGT
TTGGTTATTGGAAATGGCGTGTTTTTCTTCGTTGTTCACCTCCTATATAC
TCTTGCTTGTTGCAAAAACCACTTGTGTGACCAAGGCTGGTTCATTCAGA
ACAATACCGGTGAAGGACAGTACCGAAAGGGCAAGGATTGACGTCCAAAA
GAAGGCCTAATATCGCCATTGTTCGTTCGACTGGTTGTTTTGGAGATGTT
AACAAACTAATGTGCAAAAGCAACGCAGTCTCGTTTCGGGTTTGTTTTGT
GGTTTGATTGTGTGTTTTGTTGAGATGATATGTGTCACGAAACGGGTGCC
GTCGATGCCTTCGTCGGACCGCGCGTGTCGTGTCCTCAGGTGGAGGCGAT
GCTGAAGCACTACAAGGTGCCCGTCTTGCTAATCGAGTTCAACCCTGACA
AG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10615:636..1737-
>mRNA_E-siliculosus-1a_F_contig10615.439.1 ID=mRNA_E-siliculosus-1a_F_contig10615.439.1|Name=mRNA_E-siliculosus-1a_F_contig10615.439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10615:636..1737- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top