Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)
HSP 1 Score: 788 bits (2035), Expect = 1.060e-278
Identity = 554/599 (92.49%), Postives = 558/599 (93.16%), Query Frame = 3
Query: 270 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGGNAAAAATGSVPXXXXXAAERPPTAEEPAGEKSLDQLAAEAIAKESVRGDGSNADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSDGGGKRXXXXXXXXXXXSGSVEREDVRRERRDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVDDDGGRGRXDXIPSKXXXXXXXXXXXXXXXXXXXGNGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEG 2066
MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANG NAAAAA XXXXX RPPTAEEPAGEKSLDQLAAEAIAKESVRGDGS+ADAFGLGLDSDRVIGMIGKNPAAGEGDSSNG ATA TTP AAGSKR TG+LEQNMIPGLMEVDGEDAKFRHDLGHRAED SARSKAYVDVPV+EFGAALLRGMGWKGPEGDGXXXXXXXX PDLSKDIEPRHHRLGLGAQPKPPEEMKRPR KKPGEKPRSSDAERLKIWE KVQEERLRASRPSAAAQLAVMDVVELSEGGGE GRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDK+TATRVSEDELARRPFSENKDRSSRSS XXXXXXXXXXXSGSVERED RRERR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGRG X X XXXXXXXXXXXXXXXXXXX NGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPR GQATVRMDLGELVLEG
Sbjct: 1 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAAAAAXXXXXXXXXXXXXRPPTAEEPAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGAATAKTTPDAAGSKRNTGLLEQNMIPGLMEVDGEDAKFRHDLGHRAEDFSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXG-PDLSKDIEPRHHRLGLGAQPKPPEEMKRPRTKKPGEKPRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGERGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKSTATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDGRRERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRAGQATVRMDLGELVLEG 595
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A835ZCA3_9STRA (DExH-box splicing factor binding site-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA3_9STRA)
HSP 1 Score: 187 bits (476), Expect = 5.320e-49
Identity = 138/293 (47.10%), Postives = 161/293 (54.95%), Query Frame = 3
Query: 642 AGEKSLDQLAAEAIAKES------VRGDGSNADAFGLGLDSDRVIGM-IGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVLEQNMIPGLMEVDGED-AKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMK--RPRKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPF 1490
A EKSLD+LAAE + +E+ ++ + DA GLGLDSDRVI M + AAG RK G+LE MIPGL EV G D AK +HDL RA D+ A+S Y VPV EFGAALLRGMGW GP + EPRHHRLGLGA PKPPEE RPRK+KPGEK + D E W K A+ +AAA+L V VVEL+ R RAMVLKTQGVPGL KI VR+E G + V + V EDELA +PF
Sbjct: 8 AKEKSLDELAAEELVREADEERRQLQRNSRGTDA-GLGLDSDRVIAMKVAAEQAAGA--------------------RKRGILEAAMIPGLNEVAGGDGAKLKHDLAIRAADIDAKSDVYRHVPVEEFGAALLRGMGWAGPAPEDKEGNANPLGT------AEPRHHRLGLGAAPKPPEEKHGDRPRKRKPGEKANARDEELRAAWAAKA------AAASAAAARLTVGQVVELTA-------TRRRAMVLKTQGVPGLGKIMVRLEQGGAEEAVSRTDMQLVPEDELALKPF 260
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A7S1TSS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS7_9STRA)
HSP 1 Score: 133 bits (335), Expect = 5.350e-30
Identity = 91/224 (40.62%), Postives = 125/224 (55.80%), Query Frame = 3
Query: 864 VLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSDGGG 1535
+L Q M+PGL E++ EDAKF+HDL +RAEDL A+ +AY + + +FGAA+LRGMGW GP + K RHHRLGLGA P + P+ K + R+ +A K WE K Q ER R A+ +L + DVV + +G G R R V T GVPGL++I VR+E+TG + + A RV +EL RPF + + + + GGG
Sbjct: 50 LLLQGMVPGLNEIESEDAKFKHDLRYRAEDLGAKDEAYQRIKIDDFGAAMLRGMGWTGPTKEEEELH---------KKQHGARHHRLGLGAA---PAAILEPKGKGRAARKRADEAN--KEWEAKAQAERERLKE--ASKRLKIGDVVWIRKGDHVGVRGR----VELTVGVPGLDRIRVRLEETGAAADIPRQDAARVGHEELDERPFVDGEAPKAANGGGGG 253
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A7S3GQG0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQG0_9STRA)
HSP 1 Score: 114 bits (285), Expect = 6.050e-23
Identity = 101/297 (34.01%), Postives = 146/297 (49.16%), Query Frame = 3
Query: 639 PAGEKSLDQLAAEAIAKESVRGDGSNADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKD--IEPRHHRLGLGAQPKPPEEMKRPRKK----KPGEKPRSSDAERLK-----IWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSE 1496
PA K+LDQ+AA + + +G + D L + I + P A E A A T + K+K +L N+ P L+ + + +F++D+ RAEDL+ RS+ Y +PVS+FGAALLRGMGW GP+ D + KD + R RLGLGAQ +PPE K K G + E+ K WE K E+RL + R L DVV L GRR A+V+ +GVPGL+++ +++E +G + V + + +DELA PF E
Sbjct: 89 PAAAKTLDQIAAAELLADLQKGSTEDEDEANLLV--------IKQTPTAAE-------AAANQTDNNSQVKKKAPLLMLNVAPELLSITNDADRFKYDVSSRAEDLNVRSEIYDAIPVSQFGAALLRGMGWAGPDKD-----------EEKKKDEKLVAREQRLGLGAQARPPERAKSNNSNNILGKTGTSTARDEEEKRKESXXXXWEQKA-EQRLHSQR------LQDEDVVWLRGPAELSGRR---AVVVTAKGVPGLDRVRIQLEHSGRILEVGRKECVLLPDDELATTPFVE 349
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A7S3XXE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXE9_HETAK)
HSP 1 Score: 94.0 bits (232), Expect = 2.920e-18
Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 3
Query: 867 LEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGP-EGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKP 1148
L N IPGL E+ + +F D+G RAED+ +S+AY VPV EFGAA+LRGMGW GP EGDG P + + PRH RLGLGA+PKP
Sbjct: 115 LIANAIPGLKEIADDQERFLKDVGMRAEDMDFKSEAYRAVPVEEFGAAMLRGMGWAGPPEGDGE---------PAEEEPLAPRHFRLGLGAEPKP 200
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A1V9Z1I1_9STRA (G-patch_2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1I1_9STRA)
HSP 1 Score: 90.1 bits (222), Expect = 3.320e-16
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 3
Query: 831 PAAAGSKRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKP 1184
P A +++ +L +N +PG + E+ KF+HD+ HR +D+ S+AY VP+ EFGAALLRGMGW G + ++ RH RLGLGA P+PP E +KK+P
Sbjct: 103 PVDAKTEKDAPILFRNKVPGADGMTNENDKFKHDISHRPDDMDIHSEAYEAVPIEEFGAALLRGMGWSGKD-----------RVKATGSKVQMRHQRLGLGATPRPPMEGDNKKKKRP 209
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A024THQ2_9STRA (G-patch_2 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THQ2_9STRA)
HSP 1 Score: 87.8 bits (216), Expect = 1.200e-15
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 3
Query: 849 KRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMK 1163
K+ +L +N IPG+ ++ GE KF+HDL R ++L S+A+ VP+ EFGAALLRGMGW G + P SK ++ RH+RLGLGA PKP E K
Sbjct: 120 KKDAPMLTRNRIPGMDKIVGETNKFKHDLSMRPDELDIHSEAFEAVPIEEFGAALLRGMGWTGKD----------RVEPTGSK-VQMRHYRLGLGATPKPTLESK 213
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A485LIS8_9STRA (Aste57867_21911 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS8_9STRA)
HSP 1 Score: 87.0 bits (214), Expect = 1.860e-15
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 3
Query: 807 GGATATTTPAAAGSKRKTG-VLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKP 1148
GG T T+ P+++ + K +L +N IPG+ V G+ KF+HDL R ++L S A+ VP+ EFGAALLRGMGW G + P +K ++ RH+RLGLGA PKP
Sbjct: 104 GGDTKTSDPSSSSTASKEAPLLSRNRIPGMENVAGDKNKFKHDLSMRPDELDIHSDAFDAVPIEEFGAALLRGMGWTGKD----------RVEPTGAK-VQMRHYRLGLGATPKP 207
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A7S3VCG7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG7_9STRA)
HSP 1 Score: 90.9 bits (224), Expect = 2.740e-15
Identity = 80/235 (34.04%), Postives = 103/235 (43.83%), Query Frame = 3
Query: 918 KFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKD-----------IEPRHHRLGLGAQPKPPE---------------------------EMKRPRKKKPGEKPR----SSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMED--TGEKVLVDKATATRVSEDELARRPF 1490
K++ DL HRAED+S S AYV VP+SEFGAA+LRGMGW G D SKD I PR HRLGLGA P PP KR R +K G + D E + W+ K+ E++ R Q+ + V + G + R R RA ++K GVPGLN+I V+ E G + K + V + L R PF
Sbjct: 71 KYQRDLAHRAEDVSVTSSAYVSVPISEFGAAMLRGMGWSGN---------------DKSKDKXXXXXXXXXXIAPRPHRLGLGATPLPPSMSSGRGGTYNGTNTGXXXXXXXXXXXXXXKRHRARKGGSMEDIARVTKDEEAERQWKLKLLEKKKR--NVQVTQQVGSIVYVHDNYGDRDSRRVRRRAKLVKIAGVPGLNRILVQYEHEAAGATTSIKKREVSLVDPEALERSPF 288
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match:
A0A067CMB8_SAPPC (G-patch_2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CMB8_SAPPC)
HSP 1 Score: 87.0 bits (214), Expect = 3.320e-15
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 3
Query: 864 VLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPP 1151
+L +N +PGL + E+ KF+HD+ R +D+ S AY VP+ EFGAALLRGMGW G + P SK ++ RH RLGLGA PKPP
Sbjct: 118 ILFRNKLPGLENLTNENDKFKHDISMRPDDMDIHSDAYEAVPIEEFGAALLRGMGWSGKD----------RVQPTGSK-VQMRHQRLGLGATPKPP 202
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 1.06e-278 / Id = 92.49 Expect = 5.32e-49 / Id = 47.10 Expect = 5.35e-30 / Id = 40.63 Expect = 6.05e-23 / Id = 34.01 Expect = 2.92e-18 / Id = 52.63 Expect = 3.32e-16 / Id = 39.83 Expect = 1.20e-15 / Id = 45.71 Expect = 1.86e-15 / Id = 43.48 Expect = 2.74e-15 / Id = 34.04 Expect = 3.32e-15 / Id = 46.88 Sequence D7G7L2_ECTSI A0A835ZCA3_9STRA A0A7S1TSS7_9STRA A0A7S3GQG0_9STRA A0A7S3XXE9_HETAK A0A1V9Z1I1_9STRA A0A024THQ2_9STRA A0A485LIS8_9STRA A0A7S3VCG7_9STRA A0A067CMB8_SAPPC
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1
Stop 0
Cds size 1797
Model size 2066
Exons 5
Ec32 ortholog Ec-22_001960.1
Ec32 ortholog description Homologue of Arabidopsis MOS2 (MODIFIER OF SNC1, 2)
Hectar predicted targeting category other localisation
BRITE ko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Best eggNOG OG NA|NA|NA
Best tax level Eukaryota
COG Functional cat. S
EC 2.4.2.30,3.5.1.3
EggNOG OGs KOG4315@1,KOG4315@2759
EggNOG free text desc. defense response signaling pathway, resistance gene-dependent
GOs GO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
KEGG Module M00296
KEGG Pathway ko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG Reaction R00269,R00348
KEGG ko ko:K10798,ko:K13101,ko:K13566
KEGG rclass RC00010
Preferred name GPKOW
Seed eggNOG ortholog 2880.D7G7L2
Seed ortholog evalue 4e-227
Seed ortholog score 794.3
Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927559.6765196-UTR-E-siliculosus-1a_F_contig1058:31994..32263 1622927559.6765196-UTR-E-siliculosus-1a_F_contig1058:31994..32263 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig1058 31995..32263 +
1696318585.836768-UTR-E-siliculosus-1a_F_contig1058:31994..32263 1696318585.836768-UTR-E-siliculosus-1a_F_contig1058:31994..32263 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig1058 31995..32263 +
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1058.417.1
>prot_E-siliculosus-1a_F_contig1058.417.1 ID=prot_E-siliculosus-1a_F_contig1058.417.1|Name=mRNA_E-siliculosus-1a_F_contig1058.417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=599bp
MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHD DEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGGNAA AAATGSVPPPTATAAERPPTAEEPAGEKSLDQLAAEAIAKESVRGDGSNA DAFGLGLDSDRVIGMIGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVL EQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLR GMGWKGPEGDGGGGGGGGGGGPDLSKDIEPRHHRLGLGAQPKPPEEMKRP RKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSE GGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSED ELARRPFSENKDRSSRSSDGGGKRGRSRSRSRSRSSGSVEREDVRRERRD KKGKKKHKKSGGGSSSSSSSKRERSSDGRRSSPSPRRRRSDEEGDRHRRR DGRRVDDDGGRGRRDDIPSKKSRRDDGDSERGRYSNGNAGNGGQQSGPPA WLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEG back to top mRNA from alignment at E-siliculosus-1a_F_contig1058:31995..37266+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1058.417.1 ID=mRNA_E-siliculosus-1a_F_contig1058.417.1|Name=mRNA_E-siliculosus-1a_F_contig1058.417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5272bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:31995..37266+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CTGGCACAGCAGGCCTGCGCAGGCGCCTGCGTGGAACCGTCTCTGCCATC
CTGACTCTCTTTTCAAAGAAAAAATTAGTCGGTGTGTACTGTGTGGCTTC
CACCAGCGGGAGTCACGCAGCTCTAGTATTTCAAACCTTTATTTTTTGGG
TCTGCCCCACAACACCCAGCGCACGCACTCTCAGCCTGCAATCCTGAGCA
GGGAGATACTGCTGTAGGGCGAGGACGAGAAGTTGTGTGTGGATTGCCAT
CCTAAATCACGACACCATC ATGGCGAGCTCTAAGCCCAAGAAGGGCTTCT
CCATGTCCTTGGGCAAGCCTAAGCAATCCTCCTCCTCTGCTACGTCGGCC
AAGGGACCAGATCGCGCCACCAGCGGCGGCAGCAAGTCTTCCACTTCGGC
GATAGGCGTAGCCCACGATGACGAGGACGCAGGGGGGAGGGGAGGCAAGC
GGGACTACGTGACCGGAATCGGCGGGGGCAAGGTCGTCACGAAAGAGGTC
GTCGTGGACAGAGGCCCCCGCGTTATCGCCCTCGCCTCCAACCCCTGGGC
TAACGGCGGCAACGCCGCTGCTGCTGCTACCGGGTCTGTTCCTCCGCCCA
CAGCAACGGCAGCCGAACGCCCACCCACGGCAGAAGAGCCGGCAGGCGAG
AAATCTCTCGATCAGCTAGCGGCTGAAGCCATCGCCAAGGAATCCGTCCG
CGGCGACGGGTCTAACGCCGACGCCTTTGGGCTGGGCCTCGACTCCGACA
GAGTAATCGGCATGATCGGCAAGAACCCCGCCGCCGGCGAAGGCGACAGC
AGTAACGGCGGTGCAACGGCGACGACAACACCCGCCGCCGCCGGCAGCAA
AAGGAAAACTGGCGTGCTGGAGCAGAACATGATCCCCGGGCTGATGGAGG
TGGACGGGGAGGACGCCAAGTTTAGGCACGACCTAGGGCACCGAGCGGAG
GACCTCAGCGCTCGCAGCAAGGCCTACGTCGACGTTCCGGTCTCAGAGTT
CGGCGCGGCGCTGCTCCGGGGGATGGGGTGGAAGGGGCCAGAAGGAGACG
GCGGCGGCGGCGGCGGCGGTGGCGGAGGCGGGCCGGATCTGTCCAAGGAT
ATTGAGCCCAGGCATCACAGGCTCGGGTTGGGGGCGCAGCCGAAGCCCCC
AGAGGAG GTGAGGGGAGAGGCGGGGCAAGAGACGGATCGCCGACGTGTTG
TTTGCCATGGGCGAGTCTTGTGTCGGCGTCGTCGTCGCTGCTGGTATGGC
GGTGAAGGAACGTCGTGTTCGTGTTGAATTGCTGTGGTGCAGCTGTTGTG
GTTTGCACGAATGCCGTGTGCGCATGAAGATGCGCATGAGCGTCGTAGGA
GGGTGGGCTAAGTATTTTTGCCGCGTCTCCCCTGCCGGAAGATGGAAGAG
CAACGAACGGGTTTAGGCACAGAAAAGGAGTCTTCTAGTTTTAGTGGCGA
TTGGGGGATGGGGGGCTCGGGGGGTGTCTGCGGCACGTCTCATCGTTGTT
TTCGAGCCACCGCTTCCTTCAGGATTTCCAGGAGCCGACGGGTTGGTGTC
TTGCGAGAGACGGCGTCGCAATGCATGCCGCTTGTTGCCCGGGCTCTTCT
CTTGCCGCTGTATCACGAGCGATGTGACTGTCTTCTAATTGGCACAATGT
TCCCTCAGTCTTGCATTTGCACACGAGTAAGACCTGATCGTTGTTTGGTG
TACCGGAGCTGTCTTCGTCGGTACCACACCTGGTACACCAGCGTTGGCCG
TAGTACACCTTCGTGAGTACTGACGTGCGTGTTTGCTACGCTTGTGGTGA
CGAAGTTGTGGGCTTGTTTGTGGTCTGGTTCCGGATTCGTCGCTGCTTTG
GCTAAAACTCTGCAAACCCTTTCAGAGCATAACGCGTCGCTGGTAGCCTG
TCAGAATACCTACTGCAGTAGCCCCGACGTCTTTGCCGCGCGTGAGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCACTCCTCCCT
CNNNNNNNNNNCTCCAACCCCTTTCGGAGAAAACCGCGCGGCGGGTGCCC
GGTAAGAACACCCCCTGCCGGCGCCCCGCCGTCTTTGCCCCGCGGGGGCC
CCCCCCCCCCCCCCCCCTGACCCTTGTCTCGCCGCCGGTTCCCCGGTACA
ACCACTCCGGTCACCTTAATTGCCGTTCCACGTTTGTGTCAATTGCACGG
CGTCATCGCTTACTTTTCTTTCCATCTGCTGCGCGCCTCCTCAAATCTAA
TCCACAGATGAAACGGCCACGGAAAAAGAAGCCTGGAGAGAAGCCGAGGT
CATCGGACGCGGAACGCCTCAAG GTGTGGCGTCATTTCTTGGTTGCATCG
AGGTTGGAGGGACGGTCTTGGCCCGTTTCAGCCAGCAGGCCATAAACCTT
TGGATCGGTTGACGCTAATCCAGTACCGCTGAAAACAGGGCTACGTTTGT
GTCAACCACATTGTTGGCCTGACATCGTGCGTACTTACCATGGTCACGAA
CATACGACATCCAATGGGGTTTCGTGCTTGTCCATCCATTGTTCAAGAAA
GAGTGCCGAGAACAACGTTCTCCTGGGAGTTAGTCCCCCCCCCATAATGT
TGTGTTCACCCCCTGCCACTCTCGGGGGGCAGACAAGCAGCGCTGAGGGC
CGTTCGCCCCCCCCCCGGTACTCTCTGTCCCTGCGAATCGACGTGACCCC
GCCCACCATCGTCTCTCCTCTCGGTCCTAACCCTCATCCGGCGTGCCCTC
CCTGCGCTACACGCCCAATCAGATCTGGGAGAATAAGGTTCAGGAGGAGC
GCTTGCGGGCATCACGGCCAAGTGCGGCTGCGCAGCTAGCCGTCATGGAC
GTAGTGGAGTTGTCGGAGGGAGGGGGCGAGGGGGGCAGGCGCCGGCCTCG
AGCGATGGTGCTCAAGACGCAGGGGGTGCCCGGGCTAAACAAGATATCCG
TGAG GTATGCTGCTTATCTGCTGGCTGACGCGAGGGAGGTGCTTGACCAT
ATACGAGCGGACTTGCCTGGAGCGACGTAGTTTGAAGGTCCCAACAATGT
CAACGAGGGTTGGTACCGACCACGTTTCGCGACTAACAACCGGCGTGCAT
TGGCTGTACTTTTTTCATGCAACAAATCGGTTGAAAACGTCTGTAGCTTC
TTCACATGCAACATGGATTTGGCATGCTTCGTGGATTGGACCTATCATTC
CGATTGTTTGTTCACTTTCGTGGATGGTGAGTTACGTCACTGTAACATAT
TTTTTTACACCCATCTGGTGTATTTTTTTCTTGCATGTTTTATTTCCAAA
CGTTGCATTGCTTGCTCCATGTCTTGGTGTTTGAGTTCCCTTTGTCAATC
TATTCGTTCTGCATTTGTACCGAAACCTTTAGTGTCGAGATTCAGTTGGT
TTGTGTCTATTTTCACGTGTGTACTAGTAGTGCAAAGCAAGGATTTGGCG
TTGTATTTTCAGCAGAAATATCAATACTTTTCAAGAAGGCGCGCCGTGGC
CCGAGTACATGTTTGTACCAAAAAGGGGTGCATGGCAGAACCAGACGACC
ACGCCGCCCCTACTCTCCCGCGCTGTTGCTCTTTACCATGAGAGCCTCAG
CGGTACCGCCGTAACTCTACGATACCCGATACTTGATCATTCGAGGACAC
CAACACGAACGAACCTGTTGCCACTGCTGTGTGGCCGACCACCGTCCAGT
ATAGCTCAAGACACCTATGCATATCACGACATCCCCCCCCTCCAACTTGC
TCTGCTGCTCCCGCGTATCTTGGCGCTCTCTCTCTTATGTTTTTGTTCTG
GATGGAAGACCCGACCGACCCCTCCTTCCTCTTTCTCTGACGGCCCCCTC
GTATCTTGGTACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTGGTATTTCCTTTTTTGTTCAGGATGGAAGACACGGGC
GAGAAGGTTCTCGTGGACAAGGCGACCGCGACGCGCGTTTCCGAGGACGA
GTTGGCGCGAAGGCCGTTCTCGGAAAACAAGGACCGTTCTTCACGCAGCA
GCGATGGCGGCGGGAAGAGGGGCCGGAGTCGGAGCCGGAGCCGGAGCCGA
AGCAGCGGTAGCGTCGAGAG GTGAGTGGACTGGACGTCGGAATACTCTGC
TCGCGAAGCATCCTCTCGAGGCTTTCGTGATCGGTTTCGGATAATGATTT
CCTCCTTTTGCTCCATCTATGTTCTTCGTGTTCCTGCAGTATTTTGACGT
CAGCTTTTCTCCTCGTATAGTATGGAATCGAACAGTGGATCCCCTCCCAC
GGTAGGTGCGGCCACTTCTCCCGTACTGCTACTGTAGGTGCAAGGTTTCC
TTGGCTCATCTACATCTCGCGGGGAGGTGCATCAGTGGCTGAGTTGCGTA
GTCCGGTTCGACCGGGAGGATTGAGGCGCAAGGGTCGTTTTTAGCGATCG
CTCTAAAAGAGAAGGCTGGTAGTGCTGAGCAATGCTTGATGTACACGCGC
CTAAAATGGAGCTTGTTTCATGGAGGGTGGTACTGTATGCTTGGAACCGA
AATTATCTGCGAGTAAGAGCGCCTGGTTGAGAACTCGGTTGATCCGGCGA
ATCGCACAAGCACACGCTCCGACTTAAACGACACACTTAAGAGTGCCTGC
CCGAGGGTGGAGTGGTTGATTCGTTCACTGCGTTCGCGCTTCGTAGCAAT
AATTTGGAAACGCTTTTACCATTCCCACGTGCGGCGTGTGGCTGCAGGGA
AGACGTCCGTCGAGAGCGAAGAGACAAAAAGGGCAAGAAGAAGCACAAGA
AAAGCGGGGGCGGCAGCAGCAGCAGCAGCAGCAGCAAGCGAGAGCGGAGC
AGCGACGGCCGGAGATCCTCCCCCTCACCCCGCCGCCGCCGCTCCGACGA
GGAAGGCGACCGACACCGCCGACGCGACGGACGGAGAGTCGACGATGACG
GGGGGAGGGGACGCCGGGATGACATCCCCTCTAAGAAAAGCCGCCGCGAT
GATGGGGACAGCGAGAGAGGCCGCTACAGCAACGGTAACGCCGGCAATGG
AGGTCAGCAGTCCGGGCCGCCGGCCTGGCTGCGAGCCAACATTCGGGTGC
GAGTCATCCATAAGTCGTACGGCGGGGGGCGGGCGTACCTGGGGAAGGGG
AGGGTGGTGGATGTGCCGCGCGTCGGGCAGGCGACCGTTCGAATGGACCT
CGGCGAGCTTGTTCTCGAAGGT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1058:31995..37266+
>mRNA_E-siliculosus-1a_F_contig1058.417.1 ID=mRNA_E-siliculosus-1a_F_contig1058.417.1|Name=mRNA_E-siliculosus-1a_F_contig1058.417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3594bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:31995..37266+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGGCGAGCTCTAAGCCCAAGAAGGGCTTCTCCATGTCCTTGGGCAAGCC TAAGCAATCCTCCTCCTCTGCTACGTCGGCCAAGGGACCAGATCGCGCCA CCAGCGGCGGCAGCAAGTCTTCCACTTCGGCGATAGGCGTAGCCCACGAT GACGAGGACGCAGGGGGGAGGGGAGGCAAGCGGGACTACGTGACCGGAAT CGGCGGGGGCAAGGTCGTCACGAAAGAGGTCGTCGTGGACAGAGGCCCCC GCGTTATCGCCCTCGCCTCCAACCCCTGGGCTAACGGCGGCAACGCCGCT GCTGCTGCTACCGGGTCTGTTCCTCCGCCCACAGCAACGGCAGCCGAACG CCCACCCACGGCAGAAGAGCCGGCAGGCGAGAAATCTCTCGATCAGCTAG CGGCTGAAGCCATCGCCAAGGAATCCGTCCGCGGCGACGGGTCTAACGCC GACGCCTTTGGGCTGGGCCTCGACTCCGACAGAGTAATCGGCATGATCGG CAAGAACCCCGCCGCCGGCGAAGGCGACAGCAGTAACGGCGGTGCAACGG CGACGACAACACCCGCCGCCGCCGGCAGCAAAAGGAAAACTGGCGTGCTG GAGCAGAACATGATCCCCGGGCTGATGGAGGTGGACGGGGAGGACGCCAA GTTTAGGCACGACCTAGGGCACCGAGCGGAGGACCTCAGCGCTCGCAGCA AGGCCTACGTCGACGTTCCGGTCTCAGAGTTCGGCGCGGCGCTGCTCCGG GGGATGGGGTGGAAGGGGCCAGAAGGAGACGGCGGCGGCGGCGGCGGCGG TGGCGGAGGCGGGCCGGATCTGTCCAAGGATATTGAGCCCAGGCATCACA GGCTCGGGTTGGGGGCGCAGCCGAAGCCCCCAGAGGAGATGGCGAGCTCT AAGCCCAAGAAGGGCTTCTCCATGTCCTTGGGCAAGCCTAAGCAATCCTC CTCCTCTGCTACGTCGGCCAAGGGACCAGATCGCGCCACCAGCGGCGGCA GCAAGTCTTCCACTTCGGCGATAGGCGTAGCCCACGATGACGAGGACGCA GGGGGGAGGGGAGGCAAGCGGGACTACGTGACCGGAATCGGCGGGGGCAA GGTCGTCACGAAAGAGGTCGTCGTGGACAGAGGCCCCCGCGTTATCGCCC TCGCCTCCAACCCCTGGGCTAACGGCGGCAACGCCGCTGCTGCTGCTACC GGGTCTGTTCCTCCGCCCACAGCAACGGCAGCCGAACGCCCACCCACGGC AGAAGAGCCGGCAGGCGAGAAATCTCTCGATCAGCTAGCGGCTGAAGCCA TCGCCAAGGAATCCGTCCGCGGCGACGGGTCTAACGCCGACGCCTTTGGG CTGGGCCTCGACTCCGACAGAGTAATCGGCATGATCGGCAAGAACCCCGC CGCCGGCGAAGGCGACAGCAGTAACGGCGGTGCAACGGCGACGACAACAC CCGCCGCCGCCGGCAGCAAAAGGAAAACTGGCGTGCTGGAGCAGAACATG ATCCCCGGGCTGATGGAGGTGGACGGGGAGGACGCCAAGTTTAGGCACGA CCTAGGGCACCGAGCGGAGGACCTCAGCGCTCGCAGCAAGGCCTACGTCG ACGTTCCGGTCTCAGAGTTCGGCGCGGCGCTGCTCCGGGGGATGGGGTGG AAGGGGCCAGAAGGAGACGGCGGCGGCGGCGGCGGCGGTGGCGGAGGCGG GCCGGATCTGTCCAAGGATATTGAGCCCAGGCATCACAGGCTCGGGTTGG GGGCGCAGCCGAAGCCCCCAGAGGAGATGAAACGGCCACGGAAAAAGAAG CCTGGAGAGAAGCCGAGGTCATCGGACGCGGAACGCCTCAAGATGAAACG GCCACGGAAAAAGAAGCCTGGAGAGAAGCCGAGGTCATCGGACGCGGAAC GCCTCAAGATCTGGGAGAATAAGGTTCAGGAGGAGCGCTTGCGGGCATCA CGGCCAAGTGCGGCTGCGCAGCTAGCCGTCATGGACGTAGTGGAGTTGTC GGAGGGAGGGGGCGAGGGGGGCAGGCGCCGGCCTCGAGCGATGGTGCTCA AGACGCAGGGGGTGCCCGGGCTAAACAAGATATCCGTGAGATCTGGGAGA ATAAGGTTCAGGAGGAGCGCTTGCGGGCATCACGGCCAAGTGCGGCTGCG CAGCTAGCCGTCATGGACGTAGTGGAGTTGTCGGAGGGAGGGGGCGAGGG GGGCAGGCGCCGGCCTCGAGCGATGGTGCTCAAGACGCAGGGGGTGCCCG GGCTAAACAAGATATCCGTGAGGATGGAAGACACGGGCGAGAAGGTTCTC GTGGACAAGGCGACCGCGACGCGCGTTTCCGAGGACGAGTTGGCGCGAAG GCCGTTCTCGGAAAACAAGGACCGTTCTTCACGCAGCAGCGATGGCGGCG GGAAGAGGGGCCGGAGTCGGAGCCGGAGCCGGAGCCGAAGCAGCGGTAGC GTCGAGAGGATGGAAGACACGGGCGAGAAGGTTCTCGTGGACAAGGCGAC CGCGACGCGCGTTTCCGAGGACGAGTTGGCGCGAAGGCCGTTCTCGGAAA ACAAGGACCGTTCTTCACGCAGCAGCGATGGCGGCGGGAAGAGGGGCCGG AGTCGGAGCCGGAGCCGGAGCCGAAGCAGCGGTAGCGTCGAGAGGGAAGA CGTCCGTCGAGAGCGAAGAGACAAAAAGGGCAAGAAGAAGCACAAGAAAA GCGGGGGCGGCAGCAGCAGCAGCAGCAGCAGCAAGCGAGAGCGGAGCAGC GACGGCCGGAGATCCTCCCCCTCACCCCGCCGCCGCCGCTCCGACGAGGA AGGCGACCGACACCGCCGACGCGACGGACGGAGAGTCGACGATGACGGGG GGAGGGGACGCCGGGATGACATCCCCTCTAAGAAAAGCCGCCGCGATGAT GGGGACAGCGAGAGAGGCCGCTACAGCAACGGTAACGCCGGCAATGGAGG TCAGCAGTCCGGGCCGCCGGCCTGGCTGCGAGCCAACATTCGGGTGCGAG TCATCCATAAGTCGTACGGCGGGGGGCGGGCGTACCTGGGGAAGGGGAGG GTGGTGGATGTGCCGCGCGTCGGGCAGGCGACCGTTCGAATGGACCTCGG CGAGCTTGTTCTCGAAGGTGGAAGACGTCCGTCGAGAGCGAAGAGACAAA AAGGGCAAGAAGAAGCACAAGAAAAGCGGGGGCGGCAGCAGCAGCAGCAG CAGCAGCAAGCGAGAGCGGAGCAGCGACGGCCGGAGATCCTCCCCCTCAC CCCGCCGCCGCCGCTCCGACGAGGAAGGCGACCGACACCGCCGACGCGAC GGACGGAGAGTCGACGATGACGGGGGGAGGGGACGCCGGGATGACATCCC CTCTAAGAAAAGCCGCCGCGATGATGGGGACAGCGAGAGAGGCCGCTACA GCAACGGTAACGCCGGCAATGGAGGTCAGCAGTCCGGGCCGCCGGCCTGG CTGCGAGCCAACATTCGGGTGCGAGTCATCCATAAGTCGTACGGCGGGGG GCGGGCGTACCTGGGGAAGGGGAGGGTGGTGGATGTGCCGCGCGTCGGGC AGGCGACCGTTCGAATGGACCTCGGCGAGCTTGTTCTCGAAGGT back to top