mRNA_E-siliculosus-1a_F_contig1058.417.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI) HSP 1 Score: 788 bits (2035), Expect = 1.060e-278 Identity = 554/599 (92.49%), Postives = 558/599 (93.16%), Query Frame = 3 Query: 270 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGGNAAAAATGSVPXXXXXAAERPPTAEEPAGEKSLDQLAAEAIAKESVRGDGSNADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSDGGGKRXXXXXXXXXXXSGSVEREDVRRERRDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVDDDGGRGRXDXIPSKXXXXXXXXXXXXXXXXXXXGNGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEG 2066
MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANG NAAAAA XXXXX RPPTAEEPAGEKSLDQLAAEAIAKESVRGDGS+ADAFGLGLDSDRVIGMIGKNPAAGEGDSSNG ATA TTP AAGSKR TG+LEQNMIPGLMEVDGEDAKFRHDLGHRAED SARSKAYVDVPV+EFGAALLRGMGWKGPEGDGXXXXXXXX PDLSKDIEPRHHRLGLGAQPKPPEEMKRPR KKPGEKPRSSDAERLKIWE KVQEERLRASRPSAAAQLAVMDVVELSEGGGE GRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDK+TATRVSEDELARRPFSENKDRSSRSS XXXXXXXXXXXSGSVERED RRERR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGRG X X XXXXXXXXXXXXXXXXXXX NGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPR GQATVRMDLGELVLEG
Sbjct: 1 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAAAAAXXXXXXXXXXXXXRPPTAEEPAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGAATAKTTPDAAGSKRNTGLLEQNMIPGLMEVDGEDAKFRHDLGHRAEDFSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXG-PDLSKDIEPRHHRLGLGAQPKPPEEMKRPRTKKPGEKPRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGERGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKSTATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDGRRERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRAGQATVRMDLGELVLEG 595
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A835ZCA3_9STRA (DExH-box splicing factor binding site-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA3_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.320e-49 Identity = 138/293 (47.10%), Postives = 161/293 (54.95%), Query Frame = 3 Query: 642 AGEKSLDQLAAEAIAKES------VRGDGSNADAFGLGLDSDRVIGM-IGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVLEQNMIPGLMEVDGED-AKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMK--RPRKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPF 1490
A EKSLD+LAAE + +E+ ++ + DA GLGLDSDRVI M + AAG RK G+LE MIPGL EV G D AK +HDL RA D+ A+S Y VPV EFGAALLRGMGW GP + EPRHHRLGLGA PKPPEE RPRK+KPGEK + D E W K A+ +AAA+L V VVEL+ R RAMVLKTQGVPGL KI VR+E G + V + V EDELA +PF
Sbjct: 8 AKEKSLDELAAEELVREADEERRQLQRNSRGTDA-GLGLDSDRVIAMKVAAEQAAGA--------------------RKRGILEAAMIPGLNEVAGGDGAKLKHDLAIRAADIDAKSDVYRHVPVEEFGAALLRGMGWAGPAPEDKEGNANPLGT------AEPRHHRLGLGAAPKPPEEKHGDRPRKRKPGEKANARDEELRAAWAAKA------AAASAAAARLTVGQVVELTA-------TRRRAMVLKTQGVPGLGKIMVRLEQGGAEEAVSRTDMQLVPEDELALKPF 260
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A7S1TSS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS7_9STRA) HSP 1 Score: 133 bits (335), Expect = 5.350e-30 Identity = 91/224 (40.62%), Postives = 125/224 (55.80%), Query Frame = 3 Query: 864 VLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKPRSSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSDGGG 1535
+L Q M+PGL E++ EDAKF+HDL +RAEDL A+ +AY + + +FGAA+LRGMGW GP + K RHHRLGLGA P + P+ K + R+ +A K WE K Q ER R A+ +L + DVV + +G G R R V T GVPGL++I VR+E+TG + + A RV +EL RPF + + + + GGG
Sbjct: 50 LLLQGMVPGLNEIESEDAKFKHDLRYRAEDLGAKDEAYQRIKIDDFGAAMLRGMGWTGPTKEEEELH---------KKQHGARHHRLGLGAA---PAAILEPKGKGRAARKRADEAN--KEWEAKAQAERERLKE--ASKRLKIGDVVWIRKGDHVGVRGR----VELTVGVPGLDRIRVRLEETGAAADIPRQDAARVGHEELDERPFVDGEAPKAANGGGGG 253
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A7S3GQG0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQG0_9STRA) HSP 1 Score: 114 bits (285), Expect = 6.050e-23 Identity = 101/297 (34.01%), Postives = 146/297 (49.16%), Query Frame = 3 Query: 639 PAGEKSLDQLAAEAIAKESVRGDGSNADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGGATATTTPAAAGSKRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKD--IEPRHHRLGLGAQPKPPEEMKRPRKK----KPGEKPRSSDAERLK-----IWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSE 1496
PA K+LDQ+AA + + +G + D L + I + P A E A A T + K+K +L N+ P L+ + + +F++D+ RAEDL+ RS+ Y +PVS+FGAALLRGMGW GP+ D + KD + R RLGLGAQ +PPE K K G + E+ K WE K E+RL + R L DVV L GRR A+V+ +GVPGL+++ +++E +G + V + + +DELA PF E
Sbjct: 89 PAAAKTLDQIAAAELLADLQKGSTEDEDEANLLV--------IKQTPTAAE-------AAANQTDNNSQVKKKAPLLMLNVAPELLSITNDADRFKYDVSSRAEDLNVRSEIYDAIPVSQFGAALLRGMGWAGPDKD-----------EEKKKDEKLVAREQRLGLGAQARPPERAKSNNSNNILGKTGTSTARDEEEKRKESXXXXWEQKA-EQRLHSQR------LQDEDVVWLRGPAELSGRR---AVVVTAKGVPGLDRVRIQLEHSGRILEVGRKECVLLPDDELATTPFVE 349
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A7S3XXE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXE9_HETAK) HSP 1 Score: 94.0 bits (232), Expect = 2.920e-18 Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 3 Query: 867 LEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGP-EGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKP 1148
L N IPGL E+ + +F D+G RAED+ +S+AY VPV EFGAA+LRGMGW GP EGDG P + + PRH RLGLGA+PKP
Sbjct: 115 LIANAIPGLKEIADDQERFLKDVGMRAEDMDFKSEAYRAVPVEEFGAAMLRGMGWAGPPEGDGE---------PAEEEPLAPRHFRLGLGAEPKP 200
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A1V9Z1I1_9STRA (G-patch_2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1I1_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.320e-16 Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 3 Query: 831 PAAAGSKRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKP 1184
P A +++ +L +N +PG + E+ KF+HD+ HR +D+ S+AY VP+ EFGAALLRGMGW G + ++ RH RLGLGA P+PP E +KK+P
Sbjct: 103 PVDAKTEKDAPILFRNKVPGADGMTNENDKFKHDISHRPDDMDIHSEAYEAVPIEEFGAALLRGMGWSGKD-----------RVKATGSKVQMRHQRLGLGATPRPPMEGDNKKKKRP 209
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A024THQ2_9STRA (G-patch_2 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THQ2_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.200e-15 Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 3 Query: 849 KRKTGVLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMK 1163
K+ +L +N IPG+ ++ GE KF+HDL R ++L S+A+ VP+ EFGAALLRGMGW G + P SK ++ RH+RLGLGA PKP E K
Sbjct: 120 KKDAPMLTRNRIPGMDKIVGETNKFKHDLSMRPDELDIHSEAFEAVPIEEFGAALLRGMGWTGKD----------RVEPTGSK-VQMRHYRLGLGATPKPTLESK 213
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A485LIS8_9STRA (Aste57867_21911 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS8_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.860e-15 Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 3 Query: 807 GGATATTTPAAAGSKRKTG-VLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKP 1148
GG T T+ P+++ + K +L +N IPG+ V G+ KF+HDL R ++L S A+ VP+ EFGAALLRGMGW G + P +K ++ RH+RLGLGA PKP
Sbjct: 104 GGDTKTSDPSSSSTASKEAPLLSRNRIPGMENVAGDKNKFKHDLSMRPDELDIHSDAFDAVPIEEFGAALLRGMGWTGKD----------RVEPTGAK-VQMRHYRLGLGATPKP 207
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A7S3VCG7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.740e-15 Identity = 80/235 (34.04%), Postives = 103/235 (43.83%), Query Frame = 3 Query: 918 KFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKD-----------IEPRHHRLGLGAQPKPPE---------------------------EMKRPRKKKPGEKPR----SSDAERLKIWENKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMED--TGEKVLVDKATATRVSEDELARRPF 1490
K++ DL HRAED+S S AYV VP+SEFGAA+LRGMGW G D SKD I PR HRLGLGA P PP KR R +K G + D E + W+ K+ E++ R Q+ + V + G + R R RA ++K GVPGLN+I V+ E G + K + V + L R PF
Sbjct: 71 KYQRDLAHRAEDVSVTSSAYVSVPISEFGAAMLRGMGWSGN---------------DKSKDKXXXXXXXXXXIAPRPHRLGLGATPLPPSMSSGRGGTYNGTNTGXXXXXXXXXXXXXXKRHRARKGGSMEDIARVTKDEEAERQWKLKLLEKKKR--NVQVTQQVGSIVYVHDNYGDRDSRRVRRRAKLVKIAGVPGLNRILVQYEHEAAGATTSIKKREVSLVDPEALERSPF 288
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Match: A0A067CMB8_SAPPC (G-patch_2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CMB8_SAPPC) HSP 1 Score: 87.0 bits (214), Expect = 3.320e-15 Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 3 Query: 864 VLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVSEFGAALLRGMGWKGPEGDGXXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPP 1151
+L +N +PGL + E+ KF+HD+ R +D+ S AY VP+ EFGAALLRGMGW G + P SK ++ RH RLGLGA PKPP
Sbjct: 118 ILFRNKLPGLENLTNENDKFKHDISMRPDDMDIHSDAYEAVPIEEFGAALLRGMGWSGKD----------RVQPTGSK-VQMRHQRLGLGATPKPP 202 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1058.417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1058.417.1 >prot_E-siliculosus-1a_F_contig1058.417.1 ID=prot_E-siliculosus-1a_F_contig1058.417.1|Name=mRNA_E-siliculosus-1a_F_contig1058.417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=599bp MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDback to top mRNA from alignment at E-siliculosus-1a_F_contig1058:31995..37266+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1058.417.1 ID=mRNA_E-siliculosus-1a_F_contig1058.417.1|Name=mRNA_E-siliculosus-1a_F_contig1058.417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5272bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:31995..37266+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1058:31995..37266+ >mRNA_E-siliculosus-1a_F_contig1058.417.1 ID=mRNA_E-siliculosus-1a_F_contig1058.417.1|Name=mRNA_E-siliculosus-1a_F_contig1058.417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3594bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:31995..37266+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |