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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE) HSP 1 Score: 322 bits (825), Expect = 2.930e-106 Identity = 169/180 (93.89%), Postives = 176/180 (97.78%), Query Frame = 2 Query: 32 MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 571
M+NSRTAVAGSTARLQPPEWAIFMVA+IADLVSAAGLLPVERLSLFRGLAVFLLY+EWALA ACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNA+AATANERAGVSTNVPHAGMGGN SAHR+SRH+QEG+VSGYDVSSVSGEEVVELSSWAAET SVGHDNSSS GARVRQRNPLR
Sbjct: 1 MKNSRTAVAGSTARLQPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVRQRNPLR 180
BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI) HSP 1 Score: 324 bits (831), Expect = 5.270e-106 Identity = 175/191 (91.62%), Postives = 178/191 (93.19%), Query Frame = 2 Query: 2 GCTRTAHIAS-MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 571
GCTRTAHIA M+NSRT VAG TARLQPPEWAIFMVAVIADLVSAAGLLP ERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAF ASAQERLNA+ ATANE AG+STNVP AGMGGN SAHR SRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGH NSSS GARVRQRNPLR
Sbjct: 67 GCTRTAHIAFIMKNSRTQVAGITARLQPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVRQRNPLR 257
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 543 |
| Model size | 1406 |
| Exons | 3 |
| Ec32 ortholog | Ec-22_001970.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1058.416.1 >prot_E-siliculosus-1a_F_contig1058.416.1 ID=prot_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=181bp
MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLA
VFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAA
TANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVE
LSSWAAETTSVGHDNSSSRGARVRQRNPLR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1058:28780..31844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1058.416.1 ID=mRNA_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3065bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:28780..31844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGTTGCACTCGCACTGCACACATCGCCTCCATGAGGAACAGCAGAACAG
CAGTTGCTGGGAGTACGGCACGACTGCAGCCGCCAGAGTGGGCCATCTTC
ATGGTGGCCGTAATCGCGGACCTCGTCTCTGCTGCCGGACTCCTTCCCGT
CGAACGCCTCTCACTCTTTCGAGGTCTGGCGGTGTTCTTGCTCTACAGGG
AGTGGGCGCTGGCTTTCGCCTGCGGCTTCGTTCTACCCCGGGTCGTGCCC
TTGATCGCGGTGTGCTTCTTGAAACAGAAGTGGAGGGCGTTTAAAGTGAG
TGTGAGGCGAACACGATATTTTTTCAATTTGGTTTTGTTCGCTGGAGATA
CAGCGGTGCCGTCTTTTACACAAGAGGTTCTGCAGGGAGAGCAACTTTTC
CTTTCCGACGAGAGGACTGCCCAACATCCCAGCAACGTGTACCTACATGA
ATTTTGAACCATGCTCGCAGTTTCGACCTGTACACTGCGGTGTTGCCATC
TGTACCATCCGGGGTAATGCGAAATATCCATCTGCAATTCAACGTGTGTT
GATTGCTGCATGAGAGAAGAGTGCAGCCGCTCCCTAAAAAATGTGTTGTG
CAATACCACTGAAAAAGAGGCGCTCTACGCGCGATTCCACTGTATTAGAA
GTACAAATACTTCTTGCATTCGTCACTACTGTAGGTTGCCAGCTGGACCA
ACAGGGCATGTCACCACCAATCATCCAACCGACGAGATGCTCACCGCCGT
TGAAAGCGGAAAACATACGGGTACCGAGAGTGCGGCGTACCAGTACTTCG
TAAGCTACAGCAGTTTACAGTTTTTATCTGTAGTTCCACCATCGTGGCTT
CAGCGAAACATATGTAGTACCCCATGCATACCATTGTGATTTCGGGGCAC
GCAAGCTGCGAGGGCAGATTCATATATCTTTACTTAGGGCGCATACGTGC
TTCGCCTAAACGCCCATGTGACAAACCGACCTCGGAAATGAAACTCTTCG
CCACAACTGGCGGGAGTTGGCTCCTTCGGCAAACTGTTGTGACGATTTGC
CTCTCTCTCTGCGCCTCCACCAAAACAGGCCTCCGCCCAGGAACGGTTGA
ACGCCGTGGCTGCGACTGCGAACGAGCGCGCGGGGGTCTCGACCAATGTT
CCGCACGCAGGCATGGGCGGGAACATATCTGCCCATCGAAATAGTCGGCA
TACTCAGGAAGGGGAGGTGAGATCAGCTGAACGGCAGTGACGGCACGATA
TGTCGACATTGGCTCGACGTGGGGACCTTGTGCTGGATGTCGTGCAAGTC
ATGGGTCCTGATAGGCAAACTAAGGAGTAACTGCTTGCTTTGCTCTGAGG
CAAGGGCTTTCTATTTCTACCTCGAACGGAGAGGAATGGCATGCACATAA
GCTGCGATTCGTGTTGCCAATCCAGCTGCCCAACGGGAAAGGCACTTGCC
TCGCTGAGCAGTGCACTATTTCTCCCCAGACATGTTGACGCAATCAGAGG
GCGACCCAGCTGTGTTCAACGAACGGGCTCGACAGAAGCACCGTTTGCCA
ATGGGTAGCACGCTGTATATTGCATTCAAGACACCACACACCACGGGTTG
ATTCGGCGCTTCCGATAGCAGGATGCAGACTTTTTCATTGAAAGGGCAGA
GTCGGCAGTATCTTTCGTCGAACGATCCGGACACCTCTTCCCGGCATCCT
CCGTGTTTTCCGCAGTATCGAGCTAGGACATCCGGTCGAGGGGGCATGAT
GTCTGATGCGAATCACCTGCACGGAATCTTGCCCTTGCTAGGATTGCAAC
CGGAGCAATAGGAACAATACATAGGGTATGATGTAATCATGCCCAACCTA
TCTCAGCGGTGCATCATTCTTGACAGTATTACAACGTAAGACACAATTTG
TCTGAAGACATCCTGCCCATTCTGACTCAGCGGAGCATTAGGGACCGGAT
TGTGTACCTCTCTGCAGTACAACTTATACACGCCTACATCAACCCATCTG
TTGGGGCTACCGACGCGTGGGCCCTGCGCATAACCTTTCGGTGGCCGTGA
CACATTATATCTTGCGTCTCGTTCACCTTGATCGACTCGCAGGTTAGCGG
GTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGGAGCTAAGCTCGT
GGGCAGCAGAAACCACGAGTGTTGGCCATGACAACAGCAGCAGTAGAGGA
GCAAGAGTGAGGCAACGGAATCCACTGCGATGACCACCACTCGATTCATG
ACACACCGGAGGGTAGACACAGCATGGGTACCGTCGGATTTCGGAGCGAA
GGGCTGTTTCCCCACGGCCGCCGCCGCGACCAGCGGCAGCCTCCGCCGAT
AGGAAAGTCGCTTCAAGAGGCTGTCCATGGGCACAGGGCCGTGAAAGTAG
CCTTGACCTTGAATGTACAGTTTTTAGCCGTAGCTCACACCTGAGACATG
GTTCCTATTTGGGGGGGGGGTGTTGCGTGTTTTCGCTGCCGGAGTGCTAC
GAACAAGGTACTTAACGCAGTGCTTGATTGTTTGGTGGTGTAGTGTTGGC
AGTGGCGGCAAAGCACAATCGCCTTGTTCATTTTGGAATACAGCAGTAGC
AGAGTCACACCGCAGTCGAGGCTTGGATGGTAATACAGATATCGCACATG
TATTGCAGCACAAGGCGCCCTTGACGTTGATGGATGAGAGCATTCCTTCG
ACCTCGAGTCGGCCTCTCCTGGGTAGGAGAAGGCACGGAAACAGTACATG
GCCATGTACTTTGTTCAGTACAAGGCCGAGACCTGTTACCGAAAGCGGGT
CCAGCATGCGCTTCATTCCGTACTTGTACCACCTAAGCATCGTGTGCATG
CCATCCCCGGACCAAGCGATACCCATGCTGCACCCTAAGGCATGGCTCTC
TACGGCCTAGACGCTGTAAATGTGTCTCAATTTGTGTGCAAGCAACGATG
CGTATTTAGTTAAGTGTAAATTTCTTGCTAGACCGTGCGATGCAAAGCTC
CTAGCGTAACCGTGCACGCGATGTATATCAGTTTCAAAAGTTGGAAAGAG
ACAGATGAAATATCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1058:28780..31844- >mRNA_E-siliculosus-1a_F_contig1058.416.1 ID=mRNA_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:28780..31844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGAACAGCAGAACAGCAGTTGCTGGGAGTACGGCACGACTGCAGCC
GCCAGAGTGGGCCATCTTCATGGTGGCCGTAATCGCGGACCTCGTCTCTG
CTGCCGGACTCCTTCCCGTCGAACGCCTCTCACTCTTTCGAGGTCTGGCG
GTGTTCTTGCTCTACAGGGAGTGGGCGCTGGCTTTCGCCTGCGGCTTCGT
TCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCTTCTTGAAACAGAAGT
GGAGGGCGTTTAAAATGAGGAACAGCAGAACAGCAGTTGCTGGGAGTACG
GCACGACTGCAGCCGCCAGAGTGGGCCATCTTCATGGTGGCCGTAATCGC
GGACCTCGTCTCTGCTGCCGGACTCCTTCCCGTCGAACGCCTCTCACTCT
TTCGAGGTCTGGCGGTGTTCTTGCTCTACAGGGAGTGGGCGCTGGCTTTC
GCCTGCGGCTTCGTTCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCTT
CTTGAAACAGAAGTGGAGGGCGTTTAAAGCCTCCGCCCAGGAACGGTTGA
ACGCCGTGGCTGCGACTGCGAACGAGCGCGCGGGGGTCTCGACCAATGTT
CCGCACGCAGGCATGGGCGGGAACATATCTGCCCATCGAAATAGTCGGCA
TACTCAGGAAGGGGAGGCCTCCGCCCAGGAACGGTTGAACGCCGTGGCTG
CGACTGCGAACGAGCGCGCGGGGGTCTCGACCAATGTTCCGCACGCAGGC
ATGGGCGGGAACATATCTGCCCATCGAAATAGTCGGCATACTCAGGAAGG
GGAGGTTAGCGGGTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGG
AGCTAAGCTCGTGGGCAGCAGAAACCACGAGTGTTGGCCATGACAACAGC
AGCAGTAGAGGAGCAAGAGTGAGGCAACGGAATCCACTGCGATGAGTTAG
CGGGTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGGAGCTAAGCT
CGTGGGCAGCAGAAACCACGAGTGTTGGCCATGACAACAGCAGCAGTAGA
GGAGCAAGAGTGAGGCAACGGAATCCACTGCGATGA back to top
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