mRNA_E-siliculosus-1a_F_contig1058.416.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE) HSP 1 Score: 322 bits (825), Expect = 2.930e-106 Identity = 169/180 (93.89%), Postives = 176/180 (97.78%), Query Frame = 2 Query: 32 MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 571
M+NSRTAVAGSTARLQPPEWAIFMVA+IADLVSAAGLLPVERLSLFRGLAVFLLY+EWALA ACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNA+AATANERAGVSTNVPHAGMGGN SAHR+SRH+QEG+VSGYDVSSVSGEEVVELSSWAAET SVGHDNSSS GARVRQRNPLR
Sbjct: 1 MKNSRTAVAGSTARLQPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVRQRNPLR 180
BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI) HSP 1 Score: 324 bits (831), Expect = 5.270e-106 Identity = 175/191 (91.62%), Postives = 178/191 (93.19%), Query Frame = 2 Query: 2 GCTRTAHIAS-MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 571
GCTRTAHIA M+NSRT VAG TARLQPPEWAIFMVAVIADLVSAAGLLP ERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAF ASAQERLNA+ ATANE AG+STNVP AGMGGN SAHR SRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGH NSSS GARVRQRNPLR
Sbjct: 67 GCTRTAHIAFIMKNSRTQVAGITARLQPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVRQRNPLR 257 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1058.416.1 >prot_E-siliculosus-1a_F_contig1058.416.1 ID=prot_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=181bp MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAback to top mRNA from alignment at E-siliculosus-1a_F_contig1058:28780..31844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1058.416.1 ID=mRNA_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3065bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:28780..31844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1058:28780..31844- >mRNA_E-siliculosus-1a_F_contig1058.416.1 ID=mRNA_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:28780..31844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |