mRNA_E-siliculosus-1a_F_contig1058.416.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1058.416.1
Unique NamemRNA_E-siliculosus-1a_F_contig1058.416.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 2.930e-106
Identity = 169/180 (93.89%), Postives = 176/180 (97.78%), Query Frame = 2 
Query:   32 MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 571
            M+NSRTAVAGSTARLQPPEWAIFMVA+IADLVSAAGLLPVERLSLFRGLAVFLLY+EWALA ACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNA+AATANERAGVSTNVPHAGMGGN SAHR+SRH+QEG+VSGYDVSSVSGEEVVELSSWAAET SVGHDNSSS GARVRQRNPLR
Sbjct:    1 MKNSRTAVAGSTARLQPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVRQRNPLR 180
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BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 5.270e-106
Identity = 175/191 (91.62%), Postives = 178/191 (93.19%), Query Frame = 2 
Query:    2 GCTRTAHIAS-MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 571
            GCTRTAHIA  M+NSRT VAG TARLQPPEWAIFMVAVIADLVSAAGLLP ERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAF ASAQERLNA+ ATANE AG+STNVP AGMGGN SAHR SRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGH NSSS GARVRQRNPLR
Sbjct:   67 GCTRTAHIAFIMKNSRTQVAGITARLQPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVRQRNPLR 257
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGG0_9PHAE2.930e-10693.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L1_ECTSI5.270e-10691.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1058contigE-siliculosus-1a_F_contig1058:28780..31844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size543
Model size1406
Exons3
Ec32 orthologEc-22_001970.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1058.416.1prot_E-siliculosus-1a_F_contig1058.416.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1058 29612..31813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.5576828-UTR-E-siliculosus-1a_F_contig1058:28779..296111622927559.5576828-UTR-E-siliculosus-1a_F_contig1058:28779..29611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1058 28780..29611 -
1696318585.783622-UTR-E-siliculosus-1a_F_contig1058:28779..296111696318585.783622-UTR-E-siliculosus-1a_F_contig1058:28779..29611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1058 28780..29611 -
1622927559.6346014-UTR-E-siliculosus-1a_F_contig1058:31813..318441622927559.6346014-UTR-E-siliculosus-1a_F_contig1058:31813..31844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1058 31814..31844 -
1696318585.827112-UTR-E-siliculosus-1a_F_contig1058:31813..318441696318585.827112-UTR-E-siliculosus-1a_F_contig1058:31813..31844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1058 31814..31844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.5734036-CDS-E-siliculosus-1a_F_contig1058:29611..297521622927559.5734036-CDS-E-siliculosus-1a_F_contig1058:29611..29752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1058 29612..29752 -
1696318585.7944162-CDS-E-siliculosus-1a_F_contig1058:29611..297521696318585.7944162-CDS-E-siliculosus-1a_F_contig1058:29611..29752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1058 29612..29752 -
1622927559.5976253-CDS-E-siliculosus-1a_F_contig1058:30628..307661622927559.5976253-CDS-E-siliculosus-1a_F_contig1058:30628..30766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1058 30629..30766 -
1696318585.8024964-CDS-E-siliculosus-1a_F_contig1058:30628..307661696318585.8024964-CDS-E-siliculosus-1a_F_contig1058:30628..30766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1058 30629..30766 -
1622927559.6188498-CDS-E-siliculosus-1a_F_contig1058:31549..318131622927559.6188498-CDS-E-siliculosus-1a_F_contig1058:31549..31813Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1058 31550..31813 -
1696318585.816941-CDS-E-siliculosus-1a_F_contig1058:31549..318131696318585.816941-CDS-E-siliculosus-1a_F_contig1058:31549..31813Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1058 31550..31813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1058.416.1

>prot_E-siliculosus-1a_F_contig1058.416.1 ID=prot_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=181bp
MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLA
VFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAA
TANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVE
LSSWAAETTSVGHDNSSSRGARVRQRNPLR*
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mRNA from alignment at E-siliculosus-1a_F_contig1058:28780..31844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1058.416.1 ID=mRNA_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3065bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:28780..31844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGTTGCACTCGCACTGCACACATCGCCTCCATGAGGAACAGCAGAACAG
CAGTTGCTGGGAGTACGGCACGACTGCAGCCGCCAGAGTGGGCCATCTTC
ATGGTGGCCGTAATCGCGGACCTCGTCTCTGCTGCCGGACTCCTTCCCGT
CGAACGCCTCTCACTCTTTCGAGGTCTGGCGGTGTTCTTGCTCTACAGGG
AGTGGGCGCTGGCTTTCGCCTGCGGCTTCGTTCTACCCCGGGTCGTGCCC
TTGATCGCGGTGTGCTTCTTGAAACAGAAGTGGAGGGCGTTTAAAGTGAG
TGTGAGGCGAACACGATATTTTTTCAATTTGGTTTTGTTCGCTGGAGATA
CAGCGGTGCCGTCTTTTACACAAGAGGTTCTGCAGGGAGAGCAACTTTTC
CTTTCCGACGAGAGGACTGCCCAACATCCCAGCAACGTGTACCTACATGA
ATTTTGAACCATGCTCGCAGTTTCGACCTGTACACTGCGGTGTTGCCATC
TGTACCATCCGGGGTAATGCGAAATATCCATCTGCAATTCAACGTGTGTT
GATTGCTGCATGAGAGAAGAGTGCAGCCGCTCCCTAAAAAATGTGTTGTG
CAATACCACTGAAAAAGAGGCGCTCTACGCGCGATTCCACTGTATTAGAA
GTACAAATACTTCTTGCATTCGTCACTACTGTAGGTTGCCAGCTGGACCA
ACAGGGCATGTCACCACCAATCATCCAACCGACGAGATGCTCACCGCCGT
TGAAAGCGGAAAACATACGGGTACCGAGAGTGCGGCGTACCAGTACTTCG
TAAGCTACAGCAGTTTACAGTTTTTATCTGTAGTTCCACCATCGTGGCTT
CAGCGAAACATATGTAGTACCCCATGCATACCATTGTGATTTCGGGGCAC
GCAAGCTGCGAGGGCAGATTCATATATCTTTACTTAGGGCGCATACGTGC
TTCGCCTAAACGCCCATGTGACAAACCGACCTCGGAAATGAAACTCTTCG
CCACAACTGGCGGGAGTTGGCTCCTTCGGCAAACTGTTGTGACGATTTGC
CTCTCTCTCTGCGCCTCCACCAAAACAGGCCTCCGCCCAGGAACGGTTGA
ACGCCGTGGCTGCGACTGCGAACGAGCGCGCGGGGGTCTCGACCAATGTT
CCGCACGCAGGCATGGGCGGGAACATATCTGCCCATCGAAATAGTCGGCA
TACTCAGGAAGGGGAGGTGAGATCAGCTGAACGGCAGTGACGGCACGATA
TGTCGACATTGGCTCGACGTGGGGACCTTGTGCTGGATGTCGTGCAAGTC
ATGGGTCCTGATAGGCAAACTAAGGAGTAACTGCTTGCTTTGCTCTGAGG
CAAGGGCTTTCTATTTCTACCTCGAACGGAGAGGAATGGCATGCACATAA
GCTGCGATTCGTGTTGCCAATCCAGCTGCCCAACGGGAAAGGCACTTGCC
TCGCTGAGCAGTGCACTATTTCTCCCCAGACATGTTGACGCAATCAGAGG
GCGACCCAGCTGTGTTCAACGAACGGGCTCGACAGAAGCACCGTTTGCCA
ATGGGTAGCACGCTGTATATTGCATTCAAGACACCACACACCACGGGTTG
ATTCGGCGCTTCCGATAGCAGGATGCAGACTTTTTCATTGAAAGGGCAGA
GTCGGCAGTATCTTTCGTCGAACGATCCGGACACCTCTTCCCGGCATCCT
CCGTGTTTTCCGCAGTATCGAGCTAGGACATCCGGTCGAGGGGGCATGAT
GTCTGATGCGAATCACCTGCACGGAATCTTGCCCTTGCTAGGATTGCAAC
CGGAGCAATAGGAACAATACATAGGGTATGATGTAATCATGCCCAACCTA
TCTCAGCGGTGCATCATTCTTGACAGTATTACAACGTAAGACACAATTTG
TCTGAAGACATCCTGCCCATTCTGACTCAGCGGAGCATTAGGGACCGGAT
TGTGTACCTCTCTGCAGTACAACTTATACACGCCTACATCAACCCATCTG
TTGGGGCTACCGACGCGTGGGCCCTGCGCATAACCTTTCGGTGGCCGTGA
CACATTATATCTTGCGTCTCGTTCACCTTGATCGACTCGCAGGTTAGCGG
GTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGGAGCTAAGCTCGT
GGGCAGCAGAAACCACGAGTGTTGGCCATGACAACAGCAGCAGTAGAGGA
GCAAGAGTGAGGCAACGGAATCCACTGCGATGACCACCACTCGATTCATG
ACACACCGGAGGGTAGACACAGCATGGGTACCGTCGGATTTCGGAGCGAA
GGGCTGTTTCCCCACGGCCGCCGCCGCGACCAGCGGCAGCCTCCGCCGAT
AGGAAAGTCGCTTCAAGAGGCTGTCCATGGGCACAGGGCCGTGAAAGTAG
CCTTGACCTTGAATGTACAGTTTTTAGCCGTAGCTCACACCTGAGACATG
GTTCCTATTTGGGGGGGGGGTGTTGCGTGTTTTCGCTGCCGGAGTGCTAC
GAACAAGGTACTTAACGCAGTGCTTGATTGTTTGGTGGTGTAGTGTTGGC
AGTGGCGGCAAAGCACAATCGCCTTGTTCATTTTGGAATACAGCAGTAGC
AGAGTCACACCGCAGTCGAGGCTTGGATGGTAATACAGATATCGCACATG
TATTGCAGCACAAGGCGCCCTTGACGTTGATGGATGAGAGCATTCCTTCG
ACCTCGAGTCGGCCTCTCCTGGGTAGGAGAAGGCACGGAAACAGTACATG
GCCATGTACTTTGTTCAGTACAAGGCCGAGACCTGTTACCGAAAGCGGGT
CCAGCATGCGCTTCATTCCGTACTTGTACCACCTAAGCATCGTGTGCATG
CCATCCCCGGACCAAGCGATACCCATGCTGCACCCTAAGGCATGGCTCTC
TACGGCCTAGACGCTGTAAATGTGTCTCAATTTGTGTGCAAGCAACGATG
CGTATTTAGTTAAGTGTAAATTTCTTGCTAGACCGTGCGATGCAAAGCTC
CTAGCGTAACCGTGCACGCGATGTATATCAGTTTCAAAAGTTGGAAAGAG
ACAGATGAAATATCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1058:28780..31844-

>mRNA_E-siliculosus-1a_F_contig1058.416.1 ID=mRNA_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1058:28780..31844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGAACAGCAGAACAGCAGTTGCTGGGAGTACGGCACGACTGCAGCC
GCCAGAGTGGGCCATCTTCATGGTGGCCGTAATCGCGGACCTCGTCTCTG
CTGCCGGACTCCTTCCCGTCGAACGCCTCTCACTCTTTCGAGGTCTGGCG
GTGTTCTTGCTCTACAGGGAGTGGGCGCTGGCTTTCGCCTGCGGCTTCGT
TCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCTTCTTGAAACAGAAGT
GGAGGGCGTTTAAAATGAGGAACAGCAGAACAGCAGTTGCTGGGAGTACG
GCACGACTGCAGCCGCCAGAGTGGGCCATCTTCATGGTGGCCGTAATCGC
GGACCTCGTCTCTGCTGCCGGACTCCTTCCCGTCGAACGCCTCTCACTCT
TTCGAGGTCTGGCGGTGTTCTTGCTCTACAGGGAGTGGGCGCTGGCTTTC
GCCTGCGGCTTCGTTCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCTT
CTTGAAACAGAAGTGGAGGGCGTTTAAAGCCTCCGCCCAGGAACGGTTGA
ACGCCGTGGCTGCGACTGCGAACGAGCGCGCGGGGGTCTCGACCAATGTT
CCGCACGCAGGCATGGGCGGGAACATATCTGCCCATCGAAATAGTCGGCA
TACTCAGGAAGGGGAGGCCTCCGCCCAGGAACGGTTGAACGCCGTGGCTG
CGACTGCGAACGAGCGCGCGGGGGTCTCGACCAATGTTCCGCACGCAGGC
ATGGGCGGGAACATATCTGCCCATCGAAATAGTCGGCATACTCAGGAAGG
GGAGGTTAGCGGGTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGG
AGCTAAGCTCGTGGGCAGCAGAAACCACGAGTGTTGGCCATGACAACAGC
AGCAGTAGAGGAGCAAGAGTGAGGCAACGGAATCCACTGCGATGAGTTAG
CGGGTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGGAGCTAAGCT
CGTGGGCAGCAGAAACCACGAGTGTTGGCCATGACAACAGCAGCAGTAGA
GGAGCAAGAGTGAGGCAACGGAATCCACTGCGATGA
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