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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KLU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU9_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.830e-15 Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = -1 Query: 118 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIRGKIIRERR 252
P +VGKGQPEPH PVH NYSGN GLGTSH VYCN+RGK IR RR
Sbjct: 147 PAKVGKGQPEPHAPVHQANYSGNKGLGTSHIVYCNVRGKPIRVRR 191
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KWG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG0_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.890e-14 Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = -1 Query: 118 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIRGKIIRERR 252
P +VGKGQPEPH PVH NYSGN GLGTSH VYCN+RGK IR RR
Sbjct: 255 PAKVGKGQPEPHAPVHQANYSGNKGLGTSHIVYCNVRGKPIRVRR 299
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.400e-9 Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = -1 Query: 142 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIR 252
P +VGKGQPEPH PVH NYS N GLGTSH VYCN+R
Sbjct: 95 PAKVGKGQPEPHAPVHQANYSRNKGLGTSHIVYCNVR 131
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 375 |
| Model size | 376 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936583.923185-CDS-E-siliculosus-1a_M_contig996:1558..1933 | 1622936583.923185-CDS-E-siliculosus-1a_M_contig996:1558..1933 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig996 1559..1933 + |
| 1696251142.8429887-CDS-E-siliculosus-1a_M_contig996:1558..1933 | 1696251142.8429887-CDS-E-siliculosus-1a_M_contig996:1558..1933 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig996 1559..1933 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig996.17801.1 >prot_E-siliculosus-1a_M_contig996.17801.1 ID=prot_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=125bp
YTHLEKKNILRTRVVPVVSWPQLPRRASIRFGICDTVRVSTFPDDLAPDV
AVDGMAGAKAVVPRVVLRVHRVVRLWLSLADLQGFRDNGRTTSRKCPRRA
RTRRGVGRQTRRSQRSIGTITVVDN back to topmRNA from alignment at E-siliculosus-1a_M_contig996:1559..1933+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig996.17801.1 ID=mRNA_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=375bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:1559..1933+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATACTCATCTTGAGAAAAAAAACATTTTACGTACGAGAGTGGTGCCGGT
GGTATCGTGGCCGCAACTACCGCGACGAGCCTCAATCCGATTCGGCATTT
GTGACACTGTTCGTGTTTCTACGTTCCCGGATGATCTTGCCCCGGATGTT
GCAGTAGACGGTATGGCTGGTGCCAAGGCCGTTGTTCCCCGAGTAGTTCT
CCGCGTGCACCGGGTCGTGAGGCTCTGGTTGTCCCTTGCCGACCTGCAAG
GGTTTCGTGACAACGGACGGACAACTAGTAGAAAGTGTCCCAGACGCGCA
CGGACAAGACGAGGCGTAGGGCGGCAAACCCGAAGATCCCAAAGGTCCAT
CGGCACAATCACAGTTGTAGACAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig996:1559..1933+ >mRNA_E-siliculosus-1a_M_contig996.17801.1 ID=mRNA_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:1559..1933+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATACTCATCTTGAGAAAAAAAACATTTTACGTACGAGAGTGGTGCCGGT
GGTATCGTGGCCGCAACTACCGCGACGAGCCTCAATCCGATTCGGCATTT
GTGACACTGTTCGTGTTTCTACGTTCCCGGATGATCTTGCCCCGGATGTT
GCAGTAGACGGTATGGCTGGTGCCAAGGCCGTTGTTCCCCGAGTAGTTCT
CCGCGTGCACCGGGTCGTGAGGCTCTGGTTGTCCCTTGCCGACCTGCAAG
GGTTTCGTGACAACGGACGGACAACTAGTAGAAAGTGTCCCAGACGCGCA
CGGACAAGACGAGGCGTAGGGCGGCAAACCCGAAGATCCCAAAGGTCCAT
CGGCACAATCACAGTTGTAGACAACTATACTCATCTTGAGAAAAAAAACA
TTTTACGTACGAGAGTGGTGCCGGTGGTATCGTGGCCGCAACTACCGCGA
CGAGCCTCAATCCGATTCGGCATTTGTGACACTGTTCGTGTTTCTACGTT
CCCGGATGATCTTGCCCCGGATGTTGCAGTAGACGGTATGGCTGGTGCCA
AGGCCGTTGTTCCCCGAGTAGTTCTCCGCGTGCACCGGGTCGTGAGGCTC
TGGTTGTCCCTTGCCGACCTGCAAGGGTTTCGTGACAACGGACGGACAAC
TAGTAGAAAGTGTCCCAGACGCGCACGGACAAGACGAGGCGTAGGGCGGC
AAACCCGAAGATCCCAAAGGTCCATCGGCACAATCACAGTTGTAGACAAC back to top
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