mRNA_E-siliculosus-1a_M_contig996.17801.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig996.17801.1
Unique NamemRNA_E-siliculosus-1a_M_contig996.17801.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KLU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.830e-15
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = -1 
Query:  118 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIRGKIIRERR 252
            P +VGKGQPEPH PVH  NYSGN GLGTSH VYCN+RGK IR RR
Sbjct:  147 PAKVGKGQPEPHAPVHQANYSGNKGLGTSHIVYCNVRGKPIRVRR 191
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KWG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.890e-14
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = -1 
Query:  118 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIRGKIIRERR 252
            P +VGKGQPEPH PVH  NYSGN GLGTSH VYCN+RGK IR RR
Sbjct:  255 PAKVGKGQPEPHAPVHQANYSGNKGLGTSHIVYCNVRGKPIRVRR 299
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-9
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = -1 
Query:  142 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIR 252
            P +VGKGQPEPH PVH  NYS N GLGTSH VYCN+R
Sbjct:   95 PAKVGKGQPEPHAPVHQANYSRNKGLGTSHIVYCNVR 131
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLU9_9PHAE3.830e-1577.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWG0_9PHAE1.890e-1477.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIX2_9PHAE1.400e-975.68DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig996contigE-siliculosus-1a_M_contig996:1559..1933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size375
Model size376
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.923185-CDS-E-siliculosus-1a_M_contig996:1558..19331622936583.923185-CDS-E-siliculosus-1a_M_contig996:1558..1933Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig996 1559..1933 +
1696251142.8429887-CDS-E-siliculosus-1a_M_contig996:1558..19331696251142.8429887-CDS-E-siliculosus-1a_M_contig996:1558..1933Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig996 1559..1933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig996.17801.1prot_E-siliculosus-1a_M_contig996.17801.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig996 1559..1933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig996.17801.1

>prot_E-siliculosus-1a_M_contig996.17801.1 ID=prot_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=125bp
YTHLEKKNILRTRVVPVVSWPQLPRRASIRFGICDTVRVSTFPDDLAPDV
AVDGMAGAKAVVPRVVLRVHRVVRLWLSLADLQGFRDNGRTTSRKCPRRA
RTRRGVGRQTRRSQRSIGTITVVDN
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mRNA from alignment at E-siliculosus-1a_M_contig996:1559..1933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig996.17801.1 ID=mRNA_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=375bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:1559..1933+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATACTCATCTTGAGAAAAAAAACATTTTACGTACGAGAGTGGTGCCGGT
GGTATCGTGGCCGCAACTACCGCGACGAGCCTCAATCCGATTCGGCATTT
GTGACACTGTTCGTGTTTCTACGTTCCCGGATGATCTTGCCCCGGATGTT
GCAGTAGACGGTATGGCTGGTGCCAAGGCCGTTGTTCCCCGAGTAGTTCT
CCGCGTGCACCGGGTCGTGAGGCTCTGGTTGTCCCTTGCCGACCTGCAAG
GGTTTCGTGACAACGGACGGACAACTAGTAGAAAGTGTCCCAGACGCGCA
CGGACAAGACGAGGCGTAGGGCGGCAAACCCGAAGATCCCAAAGGTCCAT
CGGCACAATCACAGTTGTAGACAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig996:1559..1933+

>mRNA_E-siliculosus-1a_M_contig996.17801.1 ID=mRNA_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:1559..1933+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATACTCATCTTGAGAAAAAAAACATTTTACGTACGAGAGTGGTGCCGGT
GGTATCGTGGCCGCAACTACCGCGACGAGCCTCAATCCGATTCGGCATTT
GTGACACTGTTCGTGTTTCTACGTTCCCGGATGATCTTGCCCCGGATGTT
GCAGTAGACGGTATGGCTGGTGCCAAGGCCGTTGTTCCCCGAGTAGTTCT
CCGCGTGCACCGGGTCGTGAGGCTCTGGTTGTCCCTTGCCGACCTGCAAG
GGTTTCGTGACAACGGACGGACAACTAGTAGAAAGTGTCCCAGACGCGCA
CGGACAAGACGAGGCGTAGGGCGGCAAACCCGAAGATCCCAAAGGTCCAT
CGGCACAATCACAGTTGTAGACAACTATACTCATCTTGAGAAAAAAAACA
TTTTACGTACGAGAGTGGTGCCGGTGGTATCGTGGCCGCAACTACCGCGA
CGAGCCTCAATCCGATTCGGCATTTGTGACACTGTTCGTGTTTCTACGTT
CCCGGATGATCTTGCCCCGGATGTTGCAGTAGACGGTATGGCTGGTGCCA
AGGCCGTTGTTCCCCGAGTAGTTCTCCGCGTGCACCGGGTCGTGAGGCTC
TGGTTGTCCCTTGCCGACCTGCAAGGGTTTCGTGACAACGGACGGACAAC
TAGTAGAAAGTGTCCCAGACGCGCACGGACAAGACGAGGCGTAGGGCGGC
AAACCCGAAGATCCCAAAGGTCCATCGGCACAATCACAGTTGTAGACAAC
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