mRNA_E-siliculosus-1a_M_contig996.17801.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KLU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU9_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.830e-15 Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = -1 Query: 118 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIRGKIIRERR 252
P +VGKGQPEPH PVH NYSGN GLGTSH VYCN+RGK IR RR
Sbjct: 147 PAKVGKGQPEPHAPVHQANYSGNKGLGTSHIVYCNVRGKPIRVRR 191
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KWG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG0_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.890e-14 Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = -1 Query: 118 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIRGKIIRERR 252
P +VGKGQPEPH PVH NYSGN GLGTSH VYCN+RGK IR RR
Sbjct: 255 PAKVGKGQPEPHAPVHQANYSGNKGLGTSHIVYCNVRGKPIRVRR 299
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.400e-9 Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = -1 Query: 142 PLQVGKGQPEPHDPVHAENYSGNNGLGTSHTVYCNIR 252
P +VGKGQPEPH PVH NYS N GLGTSH VYCN+R
Sbjct: 95 PAKVGKGQPEPHAPVHQANYSRNKGLGTSHIVYCNVR 131 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig996.17801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig996.17801.1 >prot_E-siliculosus-1a_M_contig996.17801.1 ID=prot_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=125bp YTHLEKKNILRTRVVPVVSWPQLPRRASIRFGICDTVRVSTFPDDLAPDVback to top mRNA from alignment at E-siliculosus-1a_M_contig996:1559..1933+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig996.17801.1 ID=mRNA_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=375bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:1559..1933+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig996:1559..1933+ >mRNA_E-siliculosus-1a_M_contig996.17801.1 ID=mRNA_E-siliculosus-1a_M_contig996.17801.1|Name=mRNA_E-siliculosus-1a_M_contig996.17801.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:1559..1933+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |