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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5JMX0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.250e-44 Identity = 85/162 (52.47%), Postives = 109/162 (67.28%), Query Frame = -3 Query: 7 ETVPGAMNDRGAHLASQVYTHPEEFLSDDEVGTGDGAYAGVPRAREQTALQEAPHWRSSWG*EEVQHRAAPFQGRGR---EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 483
ETV G+++DRGA L+S V+ HP++FLS DEVG GDG Y G+ RA APH + E ++ Q R R E+ IGQ KK+K VGNGKAFRH+RDFE VF+VCAR TARIMRVR++YPR+ W+G E WE LG++YYWDY++ L+H
Sbjct: 239 ETVRGSLSDRGALLSSDVFQHPDQFLSADEVGMGDGNYRGLARADSNDMYMCAPHPGPNVPPEGRRYNRE--QRRFRVVVENTIGQIKKFKTVGNGKAFRHQRDFEKHVFNVCARLTARIMRVRNKYPRSEAWIGDKKEEWEAKLGIHYYWDYDEPGCYLIH 398
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5KI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI20_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.880e-33 Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -3 Query: 7 EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 252
E+ IG+ KKWK VGNGKAFRHRRDFE DVF VCAR TARIMRVR RYPR+ EW G V E WE LG++ YWDYED +S LVH
Sbjct: 243 ENTIGKIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDRYPRSPEWTGRVKEAWEVKLGIHLYWDYEDPKSYLVH 324
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.220e-33 Identity = 70/133 (52.63%), Postives = 82/133 (61.65%), Query Frame = -3 Query: 10 GTGDGAYAGVPRAREQTALQEAPHWRSSWG*EEVQHRAAPFQGRGR------EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLV 390
G GDGAY G RA + P+ + G ++ + F R E+ +GQ KKWK VGNGKAFRHRRDFE DVF VCAR TARIMRVR YPR+ EW G V E WE LG++ YWDYED +S LV
Sbjct: 140 GMGDGAYLGNARADSDLPMC-VPYRKPQQG--DLSNEERRFNTEQRRFRVVVENTVGQIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDGYPRSPEWTGRVKEAWEVKLGIHLYWDYEDPKSYLV 269
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5JLH9_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH9_9PHAE) HSP 1 Score: 123 bits (308), Expect = 6.060e-31 Identity = 74/163 (45.40%), Postives = 93/163 (57.06%), Query Frame = -3 Query: 7 ETVPGAMNDRGAHLASQVYTHPEEFLSDDEVGTGDGAYAGVPRAREQTA----LQEAPHWRSSWG*EEVQHRAAPFQGRGREHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 483
ET GA +DRGA+ S+VY P EFLS EVG GDG Y G RA A L+ + G Q R E+ IGQ KKW+V+G GK FRH RD E VF +C + TARIMRVR ++PR+ EW+ E WE LG++ + D E+ +S LVH
Sbjct: 139 ETRRGAESDRGAYNNSRVYLQPTEFLSPGEVGLGDGGYVGEARADTGEAMCVPLRGGHLTEAERGFNARQRRIRVVV----ENTIGQVKKWRVIGTGK-FRHHRDLEPAVFELCTKLTARIMRVRDKFPRSKEWLWKEYEEWEAKLGIFLFADTENPQSYLVH 296
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 336 |
| Model size | 486 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936583.8586986-CDS-E-siliculosus-1a_M_contig996:685..1021 | 1622936583.8586986-CDS-E-siliculosus-1a_M_contig996:685..1021 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig996 686..1021 + |
| 1696251142.812263-CDS-E-siliculosus-1a_M_contig996:685..1021 | 1696251142.812263-CDS-E-siliculosus-1a_M_contig996:685..1021 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig996 686..1021 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936583.8769002-UTR-E-siliculosus-1a_M_contig996:1021..1170 | 1622936583.8769002-UTR-E-siliculosus-1a_M_contig996:1021..1170 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig996 1022..1170 + |
| 1696251142.8277369-UTR-E-siliculosus-1a_M_contig996:1021..1170 | 1696251142.8277369-UTR-E-siliculosus-1a_M_contig996:1021..1170 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig996 1022..1170 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig996.17800.1 >prot_E-siliculosus-1a_M_contig996.17800.1 ID=prot_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp
SLVDKGASRVLVVPVVVNTEVCLPGLRDHANPLAVARVPVANPHDPSSAP
SAHAEHVCLEVTSVPKSLAVAHHLPLLTLAYIVFSTTTLKRCCSVLNLLS
SPGRSPMGGFL* back to topmRNA from alignment at E-siliculosus-1a_M_contig996:686..1170+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig996.17800.1 ID=mRNA_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=485bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:686..1170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTCTCGTGGACAAGGGAGCTTCTAGAGTCCTCGTAGTCCCAGTAGTAGT
AAACACCGAGGTTTGTCTCCCAGGTCTCCGGGACCATGCCAACCCACTCG
CTGTTGCGCGGGTACCTGTGGCGAACCCTCATGATCCGAGCAGTGCGCCT
AGCGCACACGCTGAACACGTCTGTCTCGAAGTCACGTCGGTGCCTAAAAG
CCTTGCCGTTGCCCACCACCTTCCACTTCTTACTCTGGCCTATATAGTGT
TCTCTACCACGACCCTGAAACGGTGCTGCTCTGTGTTGAACCTCCTCTCA
TCCCCAGGAAGATCTCCAATGGGGGGCTTCTTGTAGGGCTGTCTGCTCGC
GTGCTCGCGGAACTCCTGCGTACGCACCATCCCCCGTTCCGACCTCGTCG
TCTGACAAGAACTCTTCAGGATGGGTATACACCTGAGAAGCGAGGTGTGC
TCCCCTGTCATTCATGGCTCCAGGCACCGTCTCGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig996:686..1170+ >mRNA_E-siliculosus-1a_M_contig996.17800.1 ID=mRNA_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:686..1170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTCTCGTGGACAAGGGAGCTTCTAGAGTCCTCGTAGTCCCAGTAGTAGT
AAACACCGAGGTTTGTCTCCCAGGTCTCCGGGACCATGCCAACCCACTCG
CTGTTGCGCGGGTACCTGTGGCGAACCCTCATGATCCGAGCAGTGCGCCT
AGCGCACACGCTGAACACGTCTGTCTCGAAGTCACGTCGGTGCCTAAAAG
CCTTGCCGTTGCCCACCACCTTCCACTTCTTACTCTGGCCTATATAGTGT
TCTCTACCACGACCCTGAAACGGTGCTGCTCTGTGTTGAACCTCCTCTCA
TCCCCAGGAAGATCTCCAATGGGGGGCTTCTTGTAGTCTCTCGTGGACAA
GGGAGCTTCTAGAGTCCTCGTAGTCCCAGTAGTAGTAAACACCGAGGTTT
GTCTCCCAGGTCTCCGGGACCATGCCAACCCACTCGCTGTTGCGCGGGTA
CCTGTGGCGAACCCTCATGATCCGAGCAGTGCGCCTAGCGCACACGCTGA
ACACGTCTGTCTCGAAGTCACGTCGGTGCCTAAAAGCCTTGCCGTTGCCC
ACCACCTTCCACTTCTTACTCTGGCCTATATAGTGTTCTCTACCACGACC
CTGAAACGGTGCTGCTCTGTGTTGAACCTCCTCTCATCCCCAGGAAGATC
TCCAATGGGGGGCTTCTTGTAG back to top
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