mRNA_E-siliculosus-1a_M_contig996.17800.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5JMX0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.250e-44 Identity = 85/162 (52.47%), Postives = 109/162 (67.28%), Query Frame = -3 Query: 7 ETVPGAMNDRGAHLASQVYTHPEEFLSDDEVGTGDGAYAGVPRAREQTALQEAPHWRSSWG*EEVQHRAAPFQGRGR---EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 483
ETV G+++DRGA L+S V+ HP++FLS DEVG GDG Y G+ RA APH + E ++ Q R R E+ IGQ KK+K VGNGKAFRH+RDFE VF+VCAR TARIMRVR++YPR+ W+G E WE LG++YYWDY++ L+H
Sbjct: 239 ETVRGSLSDRGALLSSDVFQHPDQFLSADEVGMGDGNYRGLARADSNDMYMCAPHPGPNVPPEGRRYNRE--QRRFRVVVENTIGQIKKFKTVGNGKAFRHQRDFEKHVFNVCARLTARIMRVRNKYPRSEAWIGDKKEEWEAKLGIHYYWDYDEPGCYLIH 398
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5KI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI20_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.880e-33 Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -3 Query: 7 EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 252
E+ IG+ KKWK VGNGKAFRHRRDFE DVF VCAR TARIMRVR RYPR+ EW G V E WE LG++ YWDYED +S LVH
Sbjct: 243 ENTIGKIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDRYPRSPEWTGRVKEAWEVKLGIHLYWDYEDPKSYLVH 324
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.220e-33 Identity = 70/133 (52.63%), Postives = 82/133 (61.65%), Query Frame = -3 Query: 10 GTGDGAYAGVPRAREQTALQEAPHWRSSWG*EEVQHRAAPFQGRGR------EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLV 390
G GDGAY G RA + P+ + G ++ + F R E+ +GQ KKWK VGNGKAFRHRRDFE DVF VCAR TARIMRVR YPR+ EW G V E WE LG++ YWDYED +S LV
Sbjct: 140 GMGDGAYLGNARADSDLPMC-VPYRKPQQG--DLSNEERRFNTEQRRFRVVVENTVGQIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDGYPRSPEWTGRVKEAWEVKLGIHLYWDYEDPKSYLV 269
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5JLH9_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH9_9PHAE) HSP 1 Score: 123 bits (308), Expect = 6.060e-31 Identity = 74/163 (45.40%), Postives = 93/163 (57.06%), Query Frame = -3 Query: 7 ETVPGAMNDRGAHLASQVYTHPEEFLSDDEVGTGDGAYAGVPRAREQTA----LQEAPHWRSSWG*EEVQHRAAPFQGRGREHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 483
ET GA +DRGA+ S+VY P EFLS EVG GDG Y G RA A L+ + G Q R E+ IGQ KKW+V+G GK FRH RD E VF +C + TARIMRVR ++PR+ EW+ E WE LG++ + D E+ +S LVH
Sbjct: 139 ETRRGAESDRGAYNNSRVYLQPTEFLSPGEVGLGDGGYVGEARADTGEAMCVPLRGGHLTEAERGFNARQRRIRVVV----ENTIGQVKKWRVIGTGK-FRHHRDLEPAVFELCTKLTARIMRVRDKFPRSKEWLWKEYEEWEAKLGIFLFADTENPQSYLVH 296 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig996.17800.1 >prot_E-siliculosus-1a_M_contig996.17800.1 ID=prot_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp SLVDKGASRVLVVPVVVNTEVCLPGLRDHANPLAVARVPVANPHDPSSAPback to top mRNA from alignment at E-siliculosus-1a_M_contig996:686..1170+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig996.17800.1 ID=mRNA_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=485bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:686..1170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig996:686..1170+ >mRNA_E-siliculosus-1a_M_contig996.17800.1 ID=mRNA_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:686..1170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |