mRNA_E-siliculosus-1a_M_contig996.17800.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig996.17800.1
Unique NamemRNA_E-siliculosus-1a_M_contig996.17800.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5JMX0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.250e-44
Identity = 85/162 (52.47%), Postives = 109/162 (67.28%), Query Frame = -3 
Query:    7 ETVPGAMNDRGAHLASQVYTHPEEFLSDDEVGTGDGAYAGVPRAREQTALQEAPHWRSSWG*EEVQHRAAPFQGRGR---EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 483
            ETV G+++DRGA L+S V+ HP++FLS DEVG GDG Y G+ RA        APH   +   E  ++     Q R R   E+ IGQ KK+K VGNGKAFRH+RDFE  VF+VCAR TARIMRVR++YPR+  W+G   E WE  LG++YYWDY++    L+H
Sbjct:  239 ETVRGSLSDRGALLSSDVFQHPDQFLSADEVGMGDGNYRGLARADSNDMYMCAPHPGPNVPPEGRRYNRE--QRRFRVVVENTIGQIKKFKTVGNGKAFRHQRDFEKHVFNVCARLTARIMRVRNKYPRSEAWIGDKKEEWEAKLGIHYYWDYDEPGCYLIH 398
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5KI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI20_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.880e-33
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -3 
Query:    7 EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 252
            E+ IG+ KKWK VGNGKAFRHRRDFE DVF VCAR TARIMRVR RYPR+ EW G V E WE  LG++ YWDYED +S LVH
Sbjct:  243 ENTIGKIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDRYPRSPEWTGRVKEAWEVKLGIHLYWDYEDPKSYLVH 324
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5KIX2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.220e-33
Identity = 70/133 (52.63%), Postives = 82/133 (61.65%), Query Frame = -3 
Query:   10 GTGDGAYAGVPRAREQTALQEAPHWRSSWG*EEVQHRAAPFQGRGR------EHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLV 390
            G GDGAY G  RA     +   P+ +   G  ++ +    F    R      E+ +GQ KKWK VGNGKAFRHRRDFE DVF VCAR TARIMRVR  YPR+ EW G V E WE  LG++ YWDYED +S LV
Sbjct:  140 GMGDGAYLGNARADSDLPMC-VPYRKPQQG--DLSNEERRFNTEQRRFRVVVENTVGQIKKWKAVGNGKAFRHRRDFEKDVFDVCARLTARIMRVRDGYPRSPEWTGRVKEAWEVKLGIHLYWDYEDPKSYLV 269
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BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Match: A0A6H5JLH9_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 6.060e-31
Identity = 74/163 (45.40%), Postives = 93/163 (57.06%), Query Frame = -3 
Query:    7 ETVPGAMNDRGAHLASQVYTHPEEFLSDDEVGTGDGAYAGVPRAREQTA----LQEAPHWRSSWG*EEVQHRAAPFQGRGREHYIGQSKKWKVVGNGKAFRHRRDFETDVFSVCARRTARIMRVRHRYPRNSEWVGMVPETWETNLGVYYYWDYEDSRSSLVH 483
            ET  GA +DRGA+  S+VY  P EFLS  EVG GDG Y G  RA    A    L+      +  G    Q R         E+ IGQ KKW+V+G GK FRH RD E  VF +C + TARIMRVR ++PR+ EW+    E WE  LG++ + D E+ +S LVH
Sbjct:  139 ETRRGAESDRGAYNNSRVYLQPTEFLSPGEVGLGDGGYVGEARADTGEAMCVPLRGGHLTEAERGFNARQRRIRVVV----ENTIGQVKKWRVIGTGK-FRHHRDLEPAVFELCTKLTARIMRVRDKFPRSKEWLWKEYEEWEAKLGIFLFADTENPQSYLVH 296
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig996.17800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JMX0_9PHAE1.250e-4452.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KI20_9PHAE1.880e-3371.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIX2_9PHAE2.220e-3352.63DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JLH9_9PHAE6.060e-3145.40DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig996contigE-siliculosus-1a_M_contig996:686..1170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size336
Model size486
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.8586986-CDS-E-siliculosus-1a_M_contig996:685..10211622936583.8586986-CDS-E-siliculosus-1a_M_contig996:685..1021Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig996 686..1021 +
1696251142.812263-CDS-E-siliculosus-1a_M_contig996:685..10211696251142.812263-CDS-E-siliculosus-1a_M_contig996:685..1021Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig996 686..1021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.8769002-UTR-E-siliculosus-1a_M_contig996:1021..11701622936583.8769002-UTR-E-siliculosus-1a_M_contig996:1021..1170Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig996 1022..1170 +
1696251142.8277369-UTR-E-siliculosus-1a_M_contig996:1021..11701696251142.8277369-UTR-E-siliculosus-1a_M_contig996:1021..1170Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig996 1022..1170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig996.17800.1prot_E-siliculosus-1a_M_contig996.17800.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig996 686..1021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig996.17800.1

>prot_E-siliculosus-1a_M_contig996.17800.1 ID=prot_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp
SLVDKGASRVLVVPVVVNTEVCLPGLRDHANPLAVARVPVANPHDPSSAP
SAHAEHVCLEVTSVPKSLAVAHHLPLLTLAYIVFSTTTLKRCCSVLNLLS
SPGRSPMGGFL*
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mRNA from alignment at E-siliculosus-1a_M_contig996:686..1170+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig996.17800.1 ID=mRNA_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=485bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:686..1170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTCTCGTGGACAAGGGAGCTTCTAGAGTCCTCGTAGTCCCAGTAGTAGT
AAACACCGAGGTTTGTCTCCCAGGTCTCCGGGACCATGCCAACCCACTCG
CTGTTGCGCGGGTACCTGTGGCGAACCCTCATGATCCGAGCAGTGCGCCT
AGCGCACACGCTGAACACGTCTGTCTCGAAGTCACGTCGGTGCCTAAAAG
CCTTGCCGTTGCCCACCACCTTCCACTTCTTACTCTGGCCTATATAGTGT
TCTCTACCACGACCCTGAAACGGTGCTGCTCTGTGTTGAACCTCCTCTCA
TCCCCAGGAAGATCTCCAATGGGGGGCTTCTTGTAGGGCTGTCTGCTCGC
GTGCTCGCGGAACTCCTGCGTACGCACCATCCCCCGTTCCGACCTCGTCG
TCTGACAAGAACTCTTCAGGATGGGTATACACCTGAGAAGCGAGGTGTGC
TCCCCTGTCATTCATGGCTCCAGGCACCGTCTCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig996:686..1170+

>mRNA_E-siliculosus-1a_M_contig996.17800.1 ID=mRNA_E-siliculosus-1a_M_contig996.17800.1|Name=mRNA_E-siliculosus-1a_M_contig996.17800.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig996:686..1170+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTCTCGTGGACAAGGGAGCTTCTAGAGTCCTCGTAGTCCCAGTAGTAGT
AAACACCGAGGTTTGTCTCCCAGGTCTCCGGGACCATGCCAACCCACTCG
CTGTTGCGCGGGTACCTGTGGCGAACCCTCATGATCCGAGCAGTGCGCCT
AGCGCACACGCTGAACACGTCTGTCTCGAAGTCACGTCGGTGCCTAAAAG
CCTTGCCGTTGCCCACCACCTTCCACTTCTTACTCTGGCCTATATAGTGT
TCTCTACCACGACCCTGAAACGGTGCTGCTCTGTGTTGAACCTCCTCTCA
TCCCCAGGAAGATCTCCAATGGGGGGCTTCTTGTAGTCTCTCGTGGACAA
GGGAGCTTCTAGAGTCCTCGTAGTCCCAGTAGTAGTAAACACCGAGGTTT
GTCTCCCAGGTCTCCGGGACCATGCCAACCCACTCGCTGTTGCGCGGGTA
CCTGTGGCGAACCCTCATGATCCGAGCAGTGCGCCTAGCGCACACGCTGA
ACACGTCTGTCTCGAAGTCACGTCGGTGCCTAAAAGCCTTGCCGTTGCCC
ACCACCTTCCACTTCTTACTCTGGCCTATATAGTGTTCTCTACCACGACC
CTGAAACGGTGCTGCTCTGTGTTGAACCTCCTCTCATCCCCAGGAAGATC
TCCAATGGGGGGCTTCTTGTAG
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