Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI)
HSP 1 Score: 108 bits (270), Expect = 3.490e-25
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query: 892 AISWHLLQGLGTESSGQEGGVPRHHPGDTRQGVRGARTDWREPRSGPGEEARRMLDRLAG 1071
AISWHLLQGLGTESSGQEG VPRHHP DTRQGVRG RTDWREPRSGP EEAR +LD LAG
Sbjct: 6 AISWHLLQGLGTESSGQEGSVPRHHPEDTRQGVRGTRTDWREPRSGPREEARCILDCLAG 65
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A6H5JLD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD5_9PHAE)
HSP 1 Score: 102 bits (255), Expect = 2.630e-23
Identity = 58/119 (48.74%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 451 GRRRRYEDGGAFATLHSGRVVHNFCFGCTKGQGCRWREG*KNDGRHCRQNRPSQKPPQLRERLRRLKIRAQEEEACSLRXXXXXXXXXXRQVGGFQESPGDVIVESPTKTRTITELLKK 807
GRRR+YEDGG FAT H GR VH+ CF C KG+GC WRE +EE+AC+ RQVGGFQ SPGDVIVESP KTRTITELL+K
Sbjct: 4 GRRRQYEDGGVFATFHGGRFVHDSCFSCNKGRGCGWRE-------------------------------EEEEQACN------------RQVGGFQGSPGDVIVESPAKTRTITELLEK 79
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)
HSP 1 Score: 75.9 bits (185), Expect = 4.400e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2
Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VLEPKVPVKRAVFH+ITQE LVKAFE PGQI ENLVQAQE R
Sbjct: 210 QVLEPKVPVKRAVFHEITQEALVKAFEEPGQIDENLVQAQEAR 252
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A7Y5SKJ9_9BACT (DNA topoisomerase 1 n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SKJ9_9BACT)
HSP 1 Score: 59.7 bits (143), Expect = 6.260e-6
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVPV+R VFH+IT+E ++++ + P QI E+LV+AQE R
Sbjct: 117 CQVLQPKVPVRRLVFHEITKEAILESLQNPRQIDEDLVRAQETR 160
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A3M1SC99_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1SC99_9BACT)
HSP 1 Score: 58.9 bits (141), Expect = 1.100e-5
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VLEPKVPV+R VFH+IT+E +++A + P I E+LV+AQE R
Sbjct: 115 CQVLEPKVPVRRLVFHEITREAILEALKHPRSIDEHLVKAQEAR 158
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A7C4MUI2_9BACT (DNA topoisomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MUI2_9BACT)
HSP 1 Score: 57.8 bits (138), Expect = 1.980e-5
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVP+ R VFH+IT E + +A P QI ENLV+AQE R
Sbjct: 116 CEVLQPKVPIHRLVFHEITAEAIQEALRQPRQIDENLVRAQETR 159
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A7X7K818_9ACTO (Omega-protein (Fragment) n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X7K818_9ACTO)
HSP 1 Score: 54.7 bits (130), Expect = 2.630e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2
Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VL+PKVPVKR VFH+IT+E + +A E +I E LV AQE R
Sbjct: 109 EVLQPKVPVKRMVFHEITREAIARALEATREIDERLVDAQETR 151
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A1F2TG59_9BACT (DNA topoisomerase 1 n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 TaxID=1797183 RepID=A0A1F2TG59_9BACT)
HSP 1 Score: 57.0 bits (136), Expect = 4.510e-5
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 2
Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VL+PKVPV+R VFH+IT++ + +A + PG++ ENLV+AQE R
Sbjct: 111 QVLKPKVPVRRIVFHEITEDAVKEALDHPGRLDENLVRAQESR 153
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A7C1FNN9_9BACT (DNA topoisomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1FNN9_9BACT)
HSP 1 Score: 56.2 bits (134), Expect = 6.950e-5
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+P+VPV+R VFH+IT+E + +A P QI E LV+AQE R
Sbjct: 116 CEVLQPQVPVRRLVFHEITEEAIREALSNPRQIDEALVRAQETR 159
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match:
A0A7V4HWP4_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HWP4_9BACT)
HSP 1 Score: 56.2 bits (134), Expect = 7.900e-5
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVPV+R VFH+IT+E ++ A P QI LV+AQE R
Sbjct: 117 CEVLQPKVPVRRLVFHEITKEAILDALRSPRQIDHALVRAQETR 160
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 10
0 1 Expect = 3.49e-25 / Id = 88.33 Expect = 2.63e-23 / Id = 48.74 Expect = 4.40e-11 / Id = 86.05 Expect = 6.26e-6 / Id = 56.82 Expect = 1.10e-5 / Id = 59.09 Expect = 1.98e-5 / Id = 59.09 Expect = 2.63e-5 / Id = 58.14 Expect = 4.51e-5 / Id = 55.81 Expect = 6.95e-5 / Id = 56.82 Expect = 7.90e-5 / Id = 56.82 Sequence D7G723_ECTSI A0A6H5JLD5_9PHAE D8LDU2_ECTSI A0A7Y5SKJ9_9BACT A0A3M1SC99_9BACT A0A7C4MUI2_9BACT A0A7X7K818_9ACTO A0A1F2TG59_9BACT A0A7C1FNN9_9BACT A0A7V4HWP4_9BACT back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17746.1
>prot_E-siliculosus-1a_M_contig99.17746.1 ID=prot_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=67bp
MPEMTERGRPSAGTSCKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGE back to top mRNA from alignment at E-siliculosus-1a_M_contig99:53141..56371+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17746.1 ID=mRNA_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3231bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:53141..56371+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)AACGTCTCCATCCCCTGTGAGGAGAAGAAAAGAGGGATGCTGGAGGTGTT
GTGTACTGGTCAGCAACAGCAGCAGCGGCAGAGCCGACAACCAACAGTAA
AGTAGGTGTACATCGAACCGGCGTCCTTCAAGCTGTCTAACGGCGGTCAG
GGTGCTGCTGCTGCTGCTGCTTATTGCATTCGCTTTGAGGAAGTTGAGGA
GTGGGCAGTGGGCAAGGGTGGATTGCTCCGGGCTCTTCGACGCTGCTGCT
GTCGCGGGTCGGGAGAAAAAGCGGGGTTGTGGCGATGCGGTGGCGGTGCG
GTGGAGAGCACCG GTAAGAAGGATGTGTGCGGCATGCAGACTACACTACT
GCTGCAGCAGCAGCATAGATCTACAGCAGCAGAACTGCTCCGGGTGTGTG
TTGTCATCGAACAAGCCGTTTCTGCTGCTCACGATGCGGCTGTGTGTTGA
ACGAACACCACCTAGTCTGGTGTAACTCACTACTGTAGTATGAAGAACCG
TGAGAACGTAAAGGCGCAAGACGCATTGCTGGTTGCAGTGGTGTTGGGAA
CTGCTGTGAAACGTGCTCATACCTACGTTAGATACCACCCCCCTCCCCGC
CCGCCTGAGCATGCCGCCGCCGAGTGATTCAAACGTGTCTCAACACAGTA
GTCACTCGTCGAGCAGCCGATCGGATACAAGCATGAGACGTAGATTGGGC
CTTTCAGATGCATGCAGAACATGTGCATGTTGCGGTTTTAGTGCTGACGG
CAGCAGCACCGGCAACACCAGAATCATGTCACAGCGAGTACTTTGAACCA
CGTTGAGGTTGGTGACGATTTTCGCGCAGAATGTGTACAACCGCTCCGCC
TCATGGTGGCGGCACTCCCCGTCGTTCAGCCGTTGTTGCTGTTGTGAGAG
ATCATCCTAGTGGGTTATTCGCAGATAGTGTGCATAGCACCAAGAGAGAG
AGAAGTGAAAATAGAACGCCGACAGCTGGCGGGTTTTCAAAACATTATTG
TCCGTTGTCGCGGGTGCTCTGCTGCTTTTCTGTGAAGACATGTTTGTACG
CTTTTTTGTCCCCCGTGCGTGCGAACGTGGTTTTGGCATGTCTCCTGATC
GCCCCAGGGTCGGCGTGAGCGGCCCGACGTCACCCGGGCGGGGCCTTGAC
GCTGCGGTCTTTGTGGTCGGCTTGGTGGGGCTCTCTCTGCTACCGTACCC
ACCACCAACCGCAACACGTGCGAGGGTTACTACAAGTGTGTGCCGGCAGG
CGGCGGCGGTACGAAGACGGCGGTGCTTTCGCAACCCTCCATAGCGGCCG
CGTCGTCCACAACTTCTGCTTCGGCTGCACCAAAGGCCAAGGTTGCCGCT
GGCGCGAAGGATAAAAAAACGACGGCCGCCACTGCCGGCAGAACCGCCCC
TCGCAAAAACCACCACAACTACGAGAAAGGCTTCGACGGCTAAAAATACG
CGCCCAAGAAGAAGAAGCCTGTTCCCTCCGCTGCCGCTGCAAAGAAGAGC
AAGCCTGCAGCCGCCAAGTTGGAGGGTTCCAAGAGAGTCCTGGTGATGTG
ATCGTGGAGTCCCCGACCAAGACTAGGACAATCACGGAGCTCCTCAAGAA
GGCCGCCGCTGGCGGAGGCGGCGGAGGCGGAGGGGAGCTGTACAAGGGTT
ACACCGCGG ATGCCTGAAATGACCGAGAGGGGGAGGCCATCAGCTGGCAC
CTCTTGCAAG GTGCTACATGCTCATTCTTTCGGTTTATCTTTTCGCGTTT
CAGTTATGGCTGTTGTTGCTGATCCGCATTACCGTTGTCGTTTTCGTTGT
TGTTATGATCGTTTTGTGGTACCGTTGTCGTCGTCGTCGTCGTCGTTGTT
GTTGTTGTTGTTGTTGTTGCTGTTTGGTGTTACATGCCGGCTGGCTTCTC
TCTATGCCCTTGGCTCGCCCTGGGCAAGCCCCAACGCTGACTGCGGCTAT
GTGTCGCGTTTAATACTCACCTGGCCACCGCTGTTGTCGCGTTGTTTCGG
TTAGCTGGCAGTTCGTGTACAACCCCCCTTTGCTCTCCCCTTTGTGTTGT
GTTTTGTGAGTTGTTTGGTATTGGTAGCAACGAACAGCCAAGCGTTGACC
AAAACATTGTGATTCCCTCGTTTGTGCCTCGCTGTGTGGCTTGTCTGCTA
CGTCCAAGGACACCTCCTCCCGGCGTGTTCCCAGTAACTCCCCGCGCCCC
CCTCTTTACAATCTGCACGGGAGCCTCCAACTGTTTGGAGTGAACAAAGG
ACCGGTAGCACACCACGCGAAATGTCCCATATCACAGGACCGGCCACAGA
AATGCGTCCAACTTGCGCCTGTTTCTTACGATGTGCATGTGGTGTGTGTG
TGCCCTCTTTTGTCAACCAGGTCTTGGAACCGAAAGTTCCGGTCAAGAGG
GCGGTGTTCCACGACATCACCCAGGAGACACTCGTCAAGGCGTTCGAG GT
CAGACGGCAATTCTGTGTTCTGTTGGTGGTGGTTTGTTGGAGTGTTTGTT
GTTATTGTTATTGTCGGTAGTGGTGGCGCTGTGTTGGTTGGTTGCTGTTT
GTTCTTATTGTTGGTGGTGGCGTTGTCGTTTTGGCGCCTAGAATATCGTT
CTTCGACAACTAGTTGCACGGCCATGAGTCAGATTTTATGTTGGCAACGA
CAGGGACAAGGGGCCCTGCGCCAACGCCGGTGTACTCGACGCCACCTCGA
CGCAACCGGCCGTCCTGCAACAGCTCTCCACCATGTTGTCCGCAGCCACA
TGGGCGTCAGGATTCCATGTTTCCATTCTCATATCCTCTCCGACGCCGGC
GCACCCTTCTCCGACGACAGCAACGGCGACAACGATATACTTCTATGTTC
CTATTCAACCACCAAGCCTTCACCGGATCAATTATTCTGCCACTCCCTCC
TATGTACCATGTCGTCGAGGGTGTGAGTTTCGATGATCACGCAAGCATAG
AGGCGAGACACAGATGAGGTATCCCCCCCACCCCTCCCGTCTCGTGCGGT
GGCTTGCTCGTTCCGTTTTTTGTGTTATTTTTTATCATTCTTCAGGGGCC
AGGACAGATTGGCGAGAACCTCGTTCAGGCCCAGGAGAAGAGGCCCGCCG
CATGCTTGACCGCTTAG CTGGAGGGAGGGAGAGGAAGTCATATGGACAAC
GGAACGGCATTCGCCGGGCCACTGAGTAGAGGGGTCTGGTATGTTTGCGT
CCGGGCCGGTCGAAGACAGCGGCTGCTACTG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:53141..56371+
>mRNA_E-siliculosus-1a_M_contig99.17746.1 ID=mRNA_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:53141..56371+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top