mRNA_E-siliculosus-1a_M_contig99.17746.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI) HSP 1 Score: 108 bits (270), Expect = 3.490e-25 Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query: 892 AISWHLLQGLGTESSGQEGGVPRHHPGDTRQGVRGARTDWREPRSGPGEEARRMLDRLAG 1071
AISWHLLQGLGTESSGQEG VPRHHP DTRQGVRG RTDWREPRSGP EEAR +LD LAG
Sbjct: 6 AISWHLLQGLGTESSGQEGSVPRHHPEDTRQGVRGTRTDWREPRSGPREEARCILDCLAG 65
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A6H5JLD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD5_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.630e-23 Identity = 58/119 (48.74%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 451 GRRRRYEDGGAFATLHSGRVVHNFCFGCTKGQGCRWREG*KNDGRHCRQNRPSQKPPQLRERLRRLKIRAQEEEACSLRXXXXXXXXXXRQVGGFQESPGDVIVESPTKTRTITELLKK 807
GRRR+YEDGG FAT H GR VH+ CF C KG+GC WRE +EE+AC+ RQVGGFQ SPGDVIVESP KTRTITELL+K
Sbjct: 4 GRRRQYEDGGVFATFHGGRFVHDSCFSCNKGRGCGWRE-------------------------------EEEEQACN------------RQVGGFQGSPGDVIVESPAKTRTITELLEK 79
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.400e-11 Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2
Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VLEPKVPVKRAVFH+ITQE LVKAFE PGQI ENLVQAQE R
Sbjct: 210 QVLEPKVPVKRAVFHEITQEALVKAFEEPGQIDENLVQAQEAR 252
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7Y5SKJ9_9BACT (DNA topoisomerase 1 n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SKJ9_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 6.260e-6 Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVPV+R VFH+IT+E ++++ + P QI E+LV+AQE R
Sbjct: 117 CQVLQPKVPVRRLVFHEITKEAILESLQNPRQIDEDLVRAQETR 160
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A3M1SC99_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1SC99_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 1.100e-5 Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VLEPKVPV+R VFH+IT+E +++A + P I E+LV+AQE R
Sbjct: 115 CQVLEPKVPVRRLVFHEITREAILEALKHPRSIDEHLVKAQEAR 158
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7C4MUI2_9BACT (DNA topoisomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MUI2_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 1.980e-5 Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVP+ R VFH+IT E + +A P QI ENLV+AQE R
Sbjct: 116 CEVLQPKVPIHRLVFHEITAEAIQEALRQPRQIDENLVRAQETR 159
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7X7K818_9ACTO (Omega-protein (Fragment) n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X7K818_9ACTO) HSP 1 Score: 54.7 bits (130), Expect = 2.630e-5 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2
Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VL+PKVPVKR VFH+IT+E + +A E +I E LV AQE R
Sbjct: 109 EVLQPKVPVKRMVFHEITREAIARALEATREIDERLVDAQETR 151
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A1F2TG59_9BACT (DNA topoisomerase 1 n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 TaxID=1797183 RepID=A0A1F2TG59_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 4.510e-5 Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 2
Query: 914 KVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
+VL+PKVPV+R VFH+IT++ + +A + PG++ ENLV+AQE R
Sbjct: 111 QVLKPKVPVRRIVFHEITEDAVKEALDHPGRLDENLVRAQESR 153
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7C1FNN9_9BACT (DNA topoisomerase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1FNN9_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 6.950e-5 Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+P+VPV+R VFH+IT+E + +A P QI E LV+AQE R
Sbjct: 116 CEVLQPQVPVRRLVFHEITEEAIREALSNPRQIDEALVRAQETR 159
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Match: A0A7V4HWP4_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HWP4_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 7.900e-5 Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 2
Query: 911 CKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGENLVQAQEKR 1042
C+VL+PKVPV+R VFH+IT+E ++ A P QI LV+AQE R
Sbjct: 117 CEVLQPKVPVRRLVFHEITKEAILDALRSPRQIDHALVRAQETR 160 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17746.1 >prot_E-siliculosus-1a_M_contig99.17746.1 ID=prot_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=67bp MPEMTERGRPSAGTSCKVLEPKVPVKRAVFHDITQETLVKAFEGPGQIGEback to top mRNA from alignment at E-siliculosus-1a_M_contig99:53141..56371+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17746.1 ID=mRNA_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3231bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:53141..56371+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:53141..56371+ >mRNA_E-siliculosus-1a_M_contig99.17746.1 ID=mRNA_E-siliculosus-1a_M_contig99.17746.1|Name=mRNA_E-siliculosus-1a_M_contig99.17746.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:53141..56371+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |