prot_E-siliculosus-1a_F_contig105.358.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig105.358.1
Unique Nameprot_E-siliculosus-1a_F_contig105.358.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length780
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI)

HSP 1 Score: 480 bits (1235), Expect = 1.050e-156
Identity = 555/621 (89.37%), Postives = 559/621 (90.02%), Query Frame = 0 
Query:  168 RLGTRLNRPRSGGRGRHGXXXXXXXXXXXXXNAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAS-----GDGGGAADTRRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXXRGEV----RVSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXXVIIPNVVTYTSAIVACGRSGHWDEALELFREMKAVGIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEKGGILPKDPEIGQAAVTAARACGKDQAEQLRLAEILTRTRHQN 779
            RLGTRLNRPRSGGRGRHGXXXXXXXXXX   NAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEA+     GDGGGAAD RRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXX        RV+ADMI+YNTIIDVCKKCGPWEEAVKLLREMSTPGNG G            VIIPNV                            VGIQ  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLE+GGILPKDPEIGQAAVTAAR CGKDQAEQLRLAEI TRTRHQN
Sbjct:   50 RLGTRLNRPRSGGRGRHGXXXXXXXXXXS--NAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAAAAAAPGDGGGAADARRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXXXXXXXXXGRVTADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGG------VIIPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGIQPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEEGGILPKDPEIGQAAVTAARTCGKDQAEQLRLAEIFTRTRHQN 662
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BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: I2CQP9_NANGC (PPR_long domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CQP9_NANGC)

HSP 1 Score: 59.7 bits (143), Expect = 2.290e-5
Identity = 34/98 (34.69%), Postives = 48/98 (48.98%), Query Frame = 0 
Query:  511 VSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXX-------------VIIPNVVTYTSAIVACGRSGHWDEALELFREMKA 595
            +  ++ISYNT I+ C K G +EEA+ +LR M  P   +                          V  P++VTY SAI ACG +G W+ AL L  E++A
Sbjct:  377 IRPNIISYNTAIEACAKRGRFEEALAILRSMQVPDTEKAGGHVPLPSASKKRNGASHHRRHQRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRA 474
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BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: K8YNC8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNC8_NANGC)

HSP 1 Score: 55.5 bits (132), Expect = 9.460e-5
Identity = 28/92 (30.43%), Postives = 49/92 (53.26%), Query Frame = 0 
Query:  506 RGEVRVSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXXVIIPNVVTYTSAIVACGRSGHWDEALELFREMKAVG 597
            R    +  D+ +YN   ++ ++ G   E +K+L +M    +  G             I P+VVTY++A+ ACG +G W++AL L +EM ++G
Sbjct:   40 RSRFGLEPDLRAYNVAANLHRRAGDLAEVLKILEDMKQNKSLSG-------------IAPDVVTYSTALAACGEAGKWEKALSLLKEMSSLG 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSE7_ECTSI1.050e-15689.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I2CQP9_NANGC2.290e-534.69PPR_long domain-containing protein n=3 Tax=Monodop... [more]
K8YNC8_NANGC9.460e-530.43Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 459..484
e-value: 4.4E-4
score: 20.3
coord: 317..344
e-value: 0.6
score: 10.5
coord: 516..541
e-value: 4.9E-6
score: 26.4
coord: 385..415
e-value: 1.4E-5
score: 25.0
coord: 421..449
e-value: 9.2E-4
score: 19.3
coord: 280..307
e-value: 0.011
score: 16.0
coord: 353..380
e-value: 0.015
score: 15.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 385..417
e-value: 2.3E-6
score: 25.4
coord: 422..449
e-value: 5.1E-4
score: 18.0
coord: 603..636
e-value: 1.2E-5
score: 23.2
coord: 516..542
e-value: 5.9E-5
score: 21.0
coord: 353..383
e-value: 4.5E-5
score: 21.4
coord: 568..602
e-value: 1.7E-9
score: 35.2
coord: 459..484
e-value: 8.3E-5
score: 20.5
coord: 281..314
e-value: 8.3E-6
score: 23.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 565..609
e-value: 4.1E-12
score: 46.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 672..707
score: 5.579
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 708..742
score: 7.125
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 514..548
score: 10.161
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 313..347
score: 7.706
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 457..491
score: 9.876
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 383..417
score: 11.137
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 418..452
score: 8.407
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 278..312
score: 10.15
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 601..635
score: 11.268
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 566..600
score: 13.778
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 348..382
score: 9.547
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 636..671
score: 8.977
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 645..760
e-value: 2.6E-10
score: 41.9
coord: 504..644
e-value: 1.1E-33
score: 118.2
coord: 246..359
e-value: 3.0E-16
score: 61.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 363..496
e-value: 1.1E-30
score: 109.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 352..485
coord: 246..449
coord: 455..664
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..779
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..12
score: 0.508

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig105contigE-siliculosus-1a_F_contig105:59750..67195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig105.358.1mRNA_E-siliculosus-1a_F_contig105.358.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig105 59090..68406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig105.358.1 ID=prot_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=780bp
MALISSLGTAAAASTAASAAASAAVTAVTIPPHTRDCRIASSLGVRANPT
PAAAAAAAAAAGSTTVCWVPPPGRLHSSEQRRRRRRRWIGVGARPELSPA
DPVSPPARCRDATRHAGTAMGGAADCGGGSNGSFHRRTGGGGLRRLEAHR
SSTIAAETKASGGGGGGRLGTRLNRPRSGGRGRHGGKGGGGGGGGRGSNA
PNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMN
VLKEAQRLSEASGDGGGAADTRRGLEMTSFMYNACISHMSSCGRWQQALE
ILELMRAADFPPDEFCVTAAITACGRAGQWQKSLDLLDGLRADGGRTTLR
LMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTAAIAACRQGRQW
DKALELFREMPEAGVIVTSIHYNVAIAICGEAKQPERAFEMFREMQGAGD
GTRYEIDRVSYNTAIIACGEGGSWDLAFKLFREMTHPPPPPTAAEAGGDA
AAARRRGEVRVSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGG
GGGGSGGGGGGVIIPNVVTYTSAIVACGRSGHWDEALELFREMKAVGIQP
DAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHTTYSTAILLCGRC
GQLEAGLDVLRTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEEMA
VERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEKGGILPKDPEIGQA
AVTAARACGKDQAEQLRLAEILTRTRHQN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat