mRNA_E-siliculosus-1a_F_contig105.358.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 4.220e-153 Identity = 555/621 (89.37%), Postives = 559/621 (90.02%), Query Frame = 1 Query: 829 RLGTRLNRPRSGGRGRHGXXXXXXXXXXXXXNAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAS-----GDGGGAADTRRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXXRGEV----RVSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXXVIIPNVVTYTSAIVACGRSGHWDEALELFREMKAVGIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEKGGILPKDPEIGQAAVTAARACGKDQAEQLRLAEILTRTRHQN 2664
RLGTRLNRPRSGGRGRHGXXXXXXXXXX NAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEA+ GDGGGAAD RRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXX RV+ADMI+YNTIIDVCKKCGPWEEAVKLLREMSTPGNG G VIIPNV VGIQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLE+GGILPKDPEIGQAAVTAAR CGKDQAEQLRLAEI TRTRHQN
Sbjct: 50 RLGTRLNRPRSGGRGRHGXXXXXXXXXXS--NAPNGGRKERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAAAAAAPGDGGGAADARRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDGTRYEIDRVSXXXXXXXXXXXXXXXXXXXXXXXMTHPXXXXXXXXXXXXXXXXXXXXXXXXXGRVTADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGG------VIIPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGIQPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDVLRTTMXXXXXXXXXXXXXXXXXXXXVSKEWGKVRGVVEEMAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEEGGILPKDPEIGQAAVTAARTCGKDQAEQLRLAEIFTRTRHQN 662
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Match: I2CQP9_NANGC (PPR_long domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CQP9_NANGC) HSP 1 Score: 59.7 bits (143), Expect = 3.680e-5 Identity = 34/98 (34.69%), Postives = 48/98 (48.98%), Query Frame = 1 Query: 1858 VSADMISYNTIIDVCKKCGPWEEAVKLLREMSTPGNGRGXXXXXXXXXXXX-------------VIIPNVVTYTSAIVACGRSGHWDEALELFREMKA 2112
+ ++ISYNT I+ C K G +EEA+ +LR M P + V P++VTY SAI ACG +G W+ AL L E++A
Sbjct: 377 IRPNIISYNTAIEACAKRGRFEEALAILRSMQVPDTEKAGGHVPLPSASKKRNGASHHRRHQRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRA 474 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.358.1 >prot_E-siliculosus-1a_F_contig105.358.1 ID=prot_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=780bp MALISSLGTAAAASTAASAAASAAVTAVTIPPHTRDCRIASSLGVRANPTback to top mRNA from alignment at E-siliculosus-1a_F_contig105:59090..68406- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig105.358.1 ID=mRNA_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9317bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:59090..68406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:59090..68406- >mRNA_E-siliculosus-1a_F_contig105.358.1 ID=mRNA_E-siliculosus-1a_F_contig105.358.1|Name=mRNA_E-siliculosus-1a_F_contig105.358.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4680bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:59090..68406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |