Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17685.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 4.220e-8 Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 1 Query: 1 LWDVGNDTLRNEDVSGLWKLTVLTSLVGWSPWV 99
LWDVGNDTLRNEDVSGLWKLTVLTSL+ P V
Sbjct: 468 LWDVGNDTLRNEDVSGLWKLTVLTSLISPVPLV 500
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 342 |
| Model size | 389 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | 29S8M@1,2RXD7@2759 |
| EggNOG free text desc. | BT1 family |
| Seed eggNOG ortholog | 2880.D7FZP1 |
| Seed ortholog evalue | 4.6e-07 |
| Seed ortholog score | 60.8 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.3986516-CDS-E-siliculosus-1a_M_contig98:40616..40958 | 1622936556.3986516-CDS-E-siliculosus-1a_M_contig98:40616..40958 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 40617..40958 + |
| 1696251129.4430394-CDS-E-siliculosus-1a_M_contig98:40616..40958 | 1696251129.4430394-CDS-E-siliculosus-1a_M_contig98:40616..40958 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig98 40617..40958 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936556.466745-UTR-E-siliculosus-1a_M_contig98:40958..41003 | 1622936556.466745-UTR-E-siliculosus-1a_M_contig98:40958..41003 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 40959..41003 + |
| 1696251129.4528077-UTR-E-siliculosus-1a_M_contig98:40958..41003 | 1696251129.4528077-UTR-E-siliculosus-1a_M_contig98:40958..41003 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig98 40959..41003 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17685.1 >prot_E-siliculosus-1a_M_contig98.17685.1 ID=prot_E-siliculosus-1a_M_contig98.17685.1|Name=mRNA_E-siliculosus-1a_M_contig98.17685.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=114bp
LWDVGNDTLRNEDVSGLWKLTVLTSLVGWSPWVGIADGGLVFVFVLASSF
FSECTENRFGVCVVSLPPSLVVGCNGSNFGVFEVARLSPTPENQHQDLGV
LHLPRDTPLNRTM* back to topmRNA from alignment at E-siliculosus-1a_M_contig98:40617..41003+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig98.17685.1 ID=mRNA_E-siliculosus-1a_M_contig98.17685.1|Name=mRNA_E-siliculosus-1a_M_contig98.17685.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=387bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:40617..41003+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTGGGACGTTGGGAACGACACGCTGCGAAATGAAGACGTGTCCGGGCT
GTGGAAACTCACGGTGCTCACTAGCTTGGTGGGTTGGTCTCCGTGGGTGG
GGATAGCGGATGGAGGTCTCGTTTTTGTCTTCGTTCTGGCTTCGAGTTTT
TTCTCCGAGTGCACAGAGAATCGTTTCGGCGTATGCGTTGTCTCCCTGCC
CCCCTCTCTTGTCGTTGGGTGCAATGGTTCCAATTTTGGTGTGTTTGAAG
TTGCTCGCTTGTCCCCAACGCCCGAAAACCAACATCAAGACCTCGGCGTG
CTTCACCTACCCCGCGACACCCCTCTCAATCGTACTATGTAGTTGAGTGT
GCGAACGTATGTATCACCTGCGTCTGCTGTCTCCTCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:40617..41003+ >mRNA_E-siliculosus-1a_M_contig98.17685.1 ID=mRNA_E-siliculosus-1a_M_contig98.17685.1|Name=mRNA_E-siliculosus-1a_M_contig98.17685.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:40617..41003+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTGGGACGTTGGGAACGACACGCTGCGAAATGAAGACGTGTCCGGGCT
GTGGAAACTCACGGTGCTCACTAGCTTGGTGGGTTGGTCTCCGTGGGTGG
GGATAGCGGATGGAGGTCTCGTTTTTGTCTTCGTTCTGGCTTCGAGTTTT
TTCTCCGAGTGCACAGAGAATCGTTTCGGCGTATGCGTTGTCTCCCTGCC
CCCCTCTCTTGTCGTTGGGTGCAATGGTTCCAATTTTGGTGTGTTTGAAG
TTGCTCGCTTGTCCCCAACGCCCGAAAACCAACATCAAGACCTCGGCGTG
CTTCACCTACCCCGCGACACCCCTCTCAATCGTACTATGTAGCTGTGGGA
CGTTGGGAACGACACGCTGCGAAATGAAGACGTGTCCGGGCTGTGGAAAC
TCACGGTGCTCACTAGCTTGGTGGGTTGGTCTCCGTGGGTGGGGATAGCG
GATGGAGGTCTCGTTTTTGTCTTCGTTCTGGCTTCGAGTTTTTTCTCCGA
GTGCACAGAGAATCGTTTCGGCGTATGCGTTGTCTCCCTGCCCCCCTCTC
TTGTCGTTGGGTGCAATGGTTCCAATTTTGGTGTGTTTGAAGTTGCTCGC
TTGTCCCCAACGCCCGAAAACCAACATCAAGACCTCGGCGTGCTTCACCT
ACCCCGCGACACCCCTCTCAATCGTACTATGTAG back to top
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